<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30583

Description Uncharacterized protein
SequenceMASSSGPLDYWRKFFRSANSDIFEVMEHAILVAASDYPQEFRSRRDQIVEKLFAVLLPRCFGCDRVAEGEEGDRSVKRDGEKESKVDSSNDGPEDLNRIVSNYSFDEAEALTEEIEEESQIVGEVLRIKEIFANHHDESDSVLFESLRRLQLMELSVEVLKATEIGKAVNGLRRHSSKPIRHLVRTLIEGWKLLVDEWVRATAAIADDKSPESVNPPMEDEEGLPSPPLDEGALFATQTASIQLSEFFDEMDDDGNFRNNMDVEKQRGNGLPTVHDVPQRKIQPLDQSLMPKEKPETRRQELRELQAPVMRRMKQQDPLICQSKNEGILNKQSKPVIPDSGPGRPPKLVRTLKAGGEMKPKQHQDDAGPRRKQLATTQDKTKFSEEVSIRTKLELAKRKLHEGYQQAENAKKQRTIQVMELHDLPAQRHNKHPVPKSRNNIRNWANGRR
Length449
PositionUnknown
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.05
Grand average of hydropathy-0.870
Instability index60.97
Isoelectric point6.09
Molecular weight51243.17
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30583
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.18|      28|      31|     102|     131|       2
---------------------------------------------------------------------------
  102-  131 (37.25/31.18)	NYsFDEAEA.LTEEIeEESQIVG...EVLRIKEI
  134-  165 (37.93/22.51)	NH.HDESDSvLFESL.RRLQLMElsvEVLKATEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.23|      40|     146|     254|     298|       3
---------------------------------------------------------------------------
  254-  298 (62.15/41.86)	DGnFRNNMDVEKQRGNGLPTVHDVP.QRKiqplDQSLMPKEKPETR
  402-  442 (67.08/33.32)	EG.YQQAENAKKQRTIQVMELHDLPaQRH....NKHPVPKSRNNIR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.11|      20|     162|     171|     190|       4
---------------------------------------------------------------------------
  171-  190 (37.27/23.63)	GLRRHSSKPI.......R..HLVRTLIEG
  327-  355 (23.84/12.82)	GILNKQSKPVipdsgpgRppKLVRTLKAG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30583 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DDGNFRNNMDVEKQRGNGLPTVHDVPQRKIQPLDQSLMPKEKPETRRQELRELQAPVMRRMKQQDPLICQSKNEGILNKQSKPVIPDSGPGRPPKLVRTLKAGGEMKPKQHQDDAGPRRKQLATTQDKTKFSEEVSIRTK
2) ELAKRKLHEGYQQAENAKKQRTIQVMELHDLPAQRHNKHPVPKSRNNIRNWANGRR
3) IADDKSPESVNPPMEDEEGLPSPPLDEGALF
253
394
205
392
449
235










Molecular Recognition Features






MoRF SequenceStartStop




1) PKLVRTLKAGGEMKPKQ
2) PLDYWRKFFR
346
7
362
16