<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30580

Description Uncharacterized protein
SequenceMEADDVVDDSRRSCSLLEVTEHVHLWQRADASTDWKEFTTADSRKYYYNKVTKQSKWTIPDELKLAREHAEKAAIHSAPKETGTAATSVLSTVLSVEMPSSTNALSPAVQPMFSNQMQMPAISGTEPTVGVPNLHTLVTPVSASASSSTGFPSVAVDATTTVIRSNHDNSSLTNISSVPDGTSGNDLEEVKKAMPVAGKISVTAVEEKTVDEEPLVYANKLEAKNAFKSLLESSNVESDWTWEQTMRVIINDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRIKQKKAREDFTRMLEECKELTSTTRWSKAITMFEDDERFSAVERPREREDLFESYLVELQKKERAKAAEDHKKYILEYRAFLESCDFIKARHYSTANSQWRKVQDRLEDDERCSRLEKIDRLEIFQEYIHDLEKEEEEQRKIQKEQLRRAERKNRDEFRKLMEEHVAEGILTAKTHWRDYCIQVKDLPPYLAVASNASGSTPKDLFEDVAEELQKQYHEDKTQIKDAMKIGKISLASSWTFEDFKASVAGIDSLKGISEINLKLVFDELLERLREKEEKEAKKRQRLADNFSDLLYSIKEITASSKWEECKLLFEDSQEYRSIDDDTFGKEIFEGYVAHLQEKLKEKERKREEEKAKKEKEREDKEKRKEKERKEKEREREKEKGKDRVRKDETESDNVDLIDGHVSKDRKRDKDKERKHRKRHHSTADDLSSDKDEKEESKKSRRHSGDRKKSRKHAYASDSDAENRHKRHKRDRDGSRRNGGYEELEDGELGEDGEIR
Length784
PositionUnknown
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.06
Grand average of hydropathy-1.151
Instability index46.67
Isoelectric point6.04
Molecular weight91187.50
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30580
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     168.86|      25|      28|     625|     649|       1
---------------------------------------------------------------------------
  625-  649 (37.79/16.76)	QEKLKEKERKREEEKAKKEKEREDK
  655-  677 (33.08/13.65)	KER.KEKEREREKEKGK.DRVRKDE
  686-  710 (40.14/18.31)	IDGHVSKDRKRDKDKERKHRKRHHS
  728-  747 (29.76/11.45)	SRR.HSGDRK....KSRKHAYASDS
  748-  771 (28.09/10.35)	DAENRHKRHKRDRDGSRRNGGYEE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     309.86|      43|      72|     305|     347|       2
---------------------------------------------------------------------------
  238-  279 (55.16/32.43)	.SDWTWEQTMRVIIN.DKRYGAL...................KTLGERK...........QAFNEYLGQRKKQ...E
  305-  347 (68.09/41.85)	TSTTRWSKAITMFED.DERFSAV...................ERPRERE...........DLFESYLVELQKK...E
  379-  420 (62.54/37.81)	TANSQWRKVQDRLED.DERCSRL...................EKI.DRL...........EIFQEYIHDLEKE...E
  456-  504 (50.50/29.04)	TAKTHWRDYCIQVKD.LPPYLAV................asnASGSTPK...........DLFEDVAEELQKQyheD
  518-  585 (23.80/ 9.60)	SLASSWT.....FEDfKASVAGIdslkgiseinlklvfdellERLREKEekeakkrqrlaDNFSDLLYSI.KE...I
  586-  624 (49.79/28.53)	TASSKWEECKLLFED.SQEYRSI...................DDDTFGK...........EIFEGYVAHL.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.45|      14|      66|     287|     301|       4
---------------------------------------------------------------------------
  287-  300 (24.02/15.89)	QKKAREDFTRMLEE
  435-  448 (24.43/ 9.77)	ERKNRDEFRKLMEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.20|      19|      22|     120|     138|       5
---------------------------------------------------------------------------
  120-  138 (34.66/27.77)	P....AISGT.EPTVGVPNLHTLV
  140-  163 (22.54/15.47)	PvsasASSSTgFPSVAVDATTTVI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30580 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ALSPAVQPMFSNQMQMPAISGTEPTVGVPNLHTLVT
2) LKEKERKREEEKAKKEKEREDKEKRKEKERKEKEREREKEKGKDRVRKDETESDNVDLIDGHVSKDRKRDKDKERKHRKRHHSTADDLSSDKDEKEESKKSRRHSGDRKKSRKHAYASDSDAENRHKRHKRDRDGSRRNGGYEELEDGELGEDGEIR
104
628
139
784










Molecular Recognition Features






MoRF SequenceStartStop




1) KRHHSTADDLSSDKDEKEESKKSRRHSGDRKKSRKHAYASDSDAENRHKRHKRDRDG
2) RNGGYEELEDGELGEDGEIR
3) VDLID
706
765
683
762
784
687