<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30579

Description Uncharacterized protein
SequenceMDPEGKKFGRGPRELTGAVDLINHYKLSGHHDFFCKRSLPLSVADTHYLHNVVGDTEIRKGEGMELGQLFQGAPYLRESTAQIQQFDLEILGQAFQLRDTAPIDLPMSDKGVPTIPGKSKGDSKDKERKHRKHKDKDREKDKEHKKRKHRHKDRSKDKDREKKKDRSGHHDSSGDHSKKHHEKRKHDGTGDSVDNHKHKKSKHKSPKVEEVGGIKVAS
Length218
PositionHead
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.04
Grand average of hydropathy-1.472
Instability index39.10
Isoelectric point9.65
Molecular weight24912.67
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30579
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.54|      15|      15|     124|     138|       1
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  124-  138 (29.03/12.10)	KDKERKHRKHKDKDR
  140-  154 (29.50/12.43)	KDKEHKKRKHRHKDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.52|      15|      15|     169|     183|       2
---------------------------------------------------------------------------
  159-  174 (21.56/ 7.94)	DREKKKDRSgHHDSSG
  175-  190 (24.97/10.41)	DHSKKHHEKrKHDGTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.19|      24|      26|      49|      74|       3
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   49-   74 (38.98/34.54)	LHNvvGDTEIRKGEGMELGQLFQ...GAP
   76-  102 (36.21/25.29)	LRE..STAQIQQFDLEILGQAFQlrdTAP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30579 with Med19 domain of Kingdom Viridiplantae
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