<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30576

Description Uncharacterized protein
SequenceMAERQLIVAVEGTAALGPYWQTILSDYLDKIIRYYYGNEMTGQKLNGANPELALVVFNTHGPYSAFVVDRSGWTKDLDVFLQWLSAMRFTGGGFTEAAIAEGLSEALMMFSAASNVTDNHQNHETQKHCILVAASNPHPLPTPVYRPPVPASEHKETGEVQTENGLADAQTVAKSFGQCFVSLSVISPKQLPNLREIYNAGKRNPRALDPSVDHVRNPQYLVLLSENFKEACAALSRPSMPNLTHNQGISNQGIVKLDGASAAPISGPPATSNPSVNGSMMNRQPITVGSIPTATVKVEPTTVSPMVSGPAFSHLPSVANVASQGISSLQNSSPSSSQEMNASIDTTQEIKPLVNPISQSSRPAVPAPANVSILNNLSQHRQVMTSASIAGGSSIGLPTMGGTPMAVHMSNMISSGMSSSALSGISSVPVSGALMTTSQVAQNTTLGSLASATSNLSGNSNIGISSTLNNLQGNIPVGQSVSNVGQGTLGSGAQIGQGGMTINQNMMNNLVPSGVSSGPGTMIPTPGMTQQSGVHSLGVANNSAINMSLTQHAPGIQQSQSKYLKIWEGSLSGQRQGQPVFICKLEGYRSQSASDSLAADWPMTMQIVRLIAQEHMNNKQYVGKADFLVFRTLNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAGRLIGMLFPGDMVVFKPQVSSQQQQLQQHQQQQLQQQQQQLQQQQQQQLQQQQQQQLQQQQLQPQSQSHSLLQQQAQQHQHMQPQQLQQQSQPQQQQQQQQQQQQQQMVGTGMGQTFIQGHGRSQIMTQGKLSQAGPTNMPGGAFLP
Length813
PositionUnknown
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.04
Grand average of hydropathy-0.365
Instability index53.44
Isoelectric point8.47
Molecular weight87054.08
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30576
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     116.11|      17|      20|     688|     704|       1
---------------------------------------------------------------------------
  688-  704 (39.92/11.34)	QQQQLQQHQQQQLQQQQ
  711-  727 (39.30/11.07)	QQQQLQQQQQQQLQQQQ
  758-  773 (36.89/10.03)	QPQQQQQQQQQQ.QQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     331.40|      48|      48|     305|     352|       2
---------------------------------------------------------------------------
  265-  299 (34.54/ 9.14)	.......ISGpPATSN.PSV.....NG....SMMNRQPITV....GSIPTaTVKVE
  300-  351 (76.68/28.55)	PttvsPMVSG.PAFSHLPSVANVASQG..ISSLQNSSPSSSQEMNASIDT.TQEIK
  352-  396 (52.14/17.25)	P.lvnP.ISQ.SSRPAVPAPANV.......SILNNLSQHRQVMTSASIAG.GSSIG
  398-  427 (30.94/ 7.48)	P....TMGGT.PMAVHM...SNMISSG..MSSSALSGISS................
  429-  475 (46.46/14.63)	.....P.VSG..ALMTTSQVAQNTTLGslASATSNLSGNSNIGISSTLNN.LQGNI
  476-  513 (39.16/11.26)	P..vgQSVSN.VGQGTLGSGAQIGQGG..MTINQN.......MMNNLVPS......
  514-  553 (51.48/16.94)	.....GVSSG.PG.TMIPTPGMTQQSG..VHSLGVANNSA...INMSL...TQH.A
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     176.36|      45|      48|     587|     631|       5
---------------------------------------------------------------------------
  558-  582 (39.73/18.45)	....QSQSKYLKI.W.....................EGSLSGQRQGQP...VFI
  587-  631 (79.94/44.27)	GYRSQSASDSLAADWPMTMQIV.........RLIAQEHMNNKQYVGKADFLVFR
  637-  682 (56.69/29.34)	GFLGQLQEKKLCAVIQLPSQTLllsvsdkagRLIGM......LFPG..DMVVFK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30576 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SHSLLQQQAQQHQHMQPQQLQQQSQPQQQQQQQQQQQQQQMVGTGMGQTFIQGHGRSQIMTQGKLSQAGPTNMPGGAFLP
2) SMPNLTHNQGISNQGIVKLDGASAAPISGPPATSNPSVNGSMMNRQPITVGSIPTAT
3) SQGISSLQNSSPSSSQEMNASIDTTQEIKPLVNPISQSSR
734
239
323
813
295
362










Molecular Recognition Features






MoRF SequenceStartStop




NANANA