<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30571

Description Uncharacterized protein
SequenceMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSNTNPPFWIPIHIINPERPTECAVFNVKADSPRDTIQFIEWSPRSCPRALLVANFHGRITIWTQPSHKSYILFIIGPANLVRDASCWNCEYEWRQDLAVVTKWLSGMNPYGSIPSNSSTLASTKTTFEEKFLLQQSQTSVRWPPFLCVCSVFSSGSVQLHWGQWPPAQNDAAPRWFQTSKGLLGAGPSGIMAADVIITDSGIMHVAGVPLVNPSTVVVWEVMPGPGNGFQATTKIAVGCAIPPSLNPPSWAGFAPFAAYLFSLQEHFISEEKQGRKLTEHEINDVASFHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGNPASSFGGQPPVQTVWLTKVNKSIAPTDDFRNPQAYLSKPVISDELNSSDCSVERTNRLSFDPYDLPNDVRQLARIVYSAHGGEVSVAFLRGGVHVFSGANFNPVSSFHINVGSTIAAPAFSSTSCCLASVWHDSFKGRTILKIIRVLPPAIPNSLSKVNSAIWERAIADRFWWSLMVGVDWWDAVGCTQSAAEDGIASLNSVIAVLDADFHSLPSTQHRQQHGPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPATLLAEPWQASSETLSGIDADKMVVEQALVPCIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGASSARNMVASPTHSSVSPSTSQGSQSGVSSANGNSQMQAWVQGAIAKISNNADGGSSTSQNPISGPASFTPISINTGTFPGTPAVRLIGDCHFLHKLCQLLLFCLIFRRRQSPRFIGSIQKNPDSILQKVQPASNGKVEETSAVSRPTLGVAKTEEGQPVRTGQLTVGAKGLEEGPISKSVRFGSGNAGQGYTSEEVKVLFLILVDLCRRTAGLQHPLPASQVGANNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEDWHRRNMFGGPWSDPEDLRPLDNKMKSKLGGSLSSPISKLVEDQDDLSGVQGLWPRKRRFSERDAAFGLKTSVGLGSYLGIMGSRRDVITAVWKTGLDGVWYKCIRCLRQTCAFAQPGDPNPSNEREAWWISRWSHGCPMCGGTWVRVV
Length1179
PositionTail
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.08
Grand average of hydropathy-0.105
Instability index46.15
Isoelectric point7.51
Molecular weight127753.64
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30571
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     299.22|      53|      74|     308|     360|       2
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  133-  204 (30.63/ 9.74)	VVTKW...LSGMNPYGSIPS.......................................................nsstlastkttfeekfllqqsqtsvrwppflcvCS..VFSS...GSVQL.hwgqwPP.....AQND
  205-  266 (54.45/22.71)	AAPRWfqtSKGLLGAG..PS........................GIM....AADVIITD.S..........GIMH.................................VAgvPLVN...PSTVVvwevmpGPGNG..FQAT
  267-  343 (67.29/29.70)	TKIAV...GCAIPPSLNPPSwagfapfaaylfslqehfiseekqGRK....LTEHEIND.V..........ASFH.................................CS..PVSN...FSAYV......SPEAA..AQSA
  344-  420 (61.02/26.29)	ATTTW...GSGVTAVAFDPT.rggsvitvvivegqymspydpdeGPS....ITGWRVQC.W..........ES.S.................................LQ..PVVL...HPIFG......NPASSfgGQPP
  421-  483 (47.34/18.84)	VQTVW...LTKVNK.SIAPT......................ddFRNpqayLSKPVISDeL..........NSSD.................................CS.vERTNrlsFDPYD......LPNDV..RQLA
  485-  530 (38.49/14.02)	IVYSA...HGGEVSVAF............................................lrggvhvfsgANF...................................N..PVSS...FHINV......GSTIA..APAF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.40|      15|      16|     894|     909|       3
---------------------------------------------------------------------------
  887-  901 (24.29/ 8.55)	KVEETSAVSRPTLGV
  903-  917 (27.10/15.53)	KTEEGQPVRTGQLTV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.66|      17|      17|     709|     725|       4
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  709-  725 (29.61/16.27)	VPCIQAYVDAVLDLASH
  727-  743 (30.05/16.60)	ITRLRRYASFCRTLASH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     118.32|      23|     539|     575|     597|       5
---------------------------------------------------------------------------
  575-  597 (47.47/26.60)	RAIADRFWWSLMVGVDWWDAVGC
 1116- 1137 (41.42/22.28)	RDVITAVWKTGLDGV.WYKCIRC
 1156- 1168 (29.44/13.71)	REA....WW.....ISRWSH.GC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.56|      40|     774|      14|      58|       8
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   14-   58 (67.50/33.98)	AWCgkLNAIACASETCARIPSSNTN....ppfWIPIHIINPERPTECAV
  789-  835 (65.06/28.18)	AWV..QGAIAKISNNADGGSSTSQNpisgpasFTPISINTGTFPGTPAV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.24|      18|      19|     626|     644|      10
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  626-  644 (29.31/27.13)	TQHRQQHGPNLDrIKCRLL
  647-  664 (28.93/20.56)	TNAQDVRALVLD.MQARLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30571 with Med16 domain of Kingdom Viridiplantae
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