<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30567

Description Uncharacterized protein
SequenceMEGNSWRPAQGESAAASDGGSGDWRTQLQPEARHRIVNKIMETLKRHLPISVPEGINELQKIAIRFEEKIYTAASNQPDYLRKISLKMLSMENKSQHSASINPSISNSAVLNQNSADPANQGQPLSVSMVNQPSARQQILSQNIQNNTLAMAQNPANLSSALSSITGLSQSNISGVSQISNLQNMPGISQNSANNSLGQTAAPDLYSNTQRPMQGRQQQQQLISQQQHQTQNQLLYQHQFQQQYMKQKFQQSSLLQPHVQQQQSLMQTTQLQSSQQPLMQIGSNFQSGQSAMQQTQPGAIQSAVQPGLQQNQLSTVQKSAPSLLQQHPQSIARQQQQSQSAMLQQSTSMQQQPTSAPQQSNLPMQQHQQQQIIGQQTNISNVQQTQLIGQQTSATEMQQSQRVSIQQNNLLNMQQPHHLLNQHQQQQLGNQSNMSGLQQQQQQQQQQQILGSLSNVSNMQPHQRPMHIHQQPKTTIQQQQQNQQAPLAMLQPQGQQPQHQSSQQQLLSQFQSQPASLQQQLVQQHPSSMQREMQQRIQASGLLSQNAIEQQKQFVQSQIGLQEVSSSKALDSSAQTGHVGIIDWQEEIYQKIKSMKELYFADLTELYQKIVLKLQQHDVLMPSVKTSEQFDKMKSYKIMLERTLHILQLPRSNIQLGLKDKLPLYEKQITTFLATNKKKVVPSQPPGQQQFQHPGGHPQSMSQQQSSQVPQVQQHDNYANQQMNLQGSTTSVQPAAMPSMQHGSVPLSTHFGVPTPQQNMTNALQTGSAIDSAQGSSFSSLQQGGIASMQQGGLVSGQGSINVPPQTNANVMSNGSMNSLQNNINSKQPSSNAIQQQHFKQEQQQQQQQHMQNQQLKQQFQQRNMQQQIIQQQQKQQLLQLPVHQLSQLNQSNEINELKFRQGPGVKPGLYQQHFLPNQRHSYYQQLKSGAAFPISSPQNFQASSPQISHHSSPQLDQHSLLSSQIKTGTPLQSANSPFDPSPSTPIAPSPIPGDEKQISGITSVPNAGRVGHQPTAVAPQAQSLAVTTPGISASPLLAEFTSPDGNQTNHTNSGAAKAITTERPFERLIKVIRSSTPKALSSAVSDIGSVVSMIDRIAGSAPAPGNGSRAAVGEDLVAMTKCRLQARSFMSQDGSATTKKMKRDTSAMPLNNVSSAGSVNDSFKHSYGLDTSELESTATSRVKRQKVEVNHALLEEIREINQRLIGTVVNISEEDTDSNSAAPQGEGTIVKCVFTTVALCPSLKSQFASEHMSPILPLRLLVPANYPKCSPVLLDKFPDEQRESDDLSVKARSTFIISLRGLSQPMSLGEMARTWDVSARKVITEYARQTGGGTFSSRYGAWENCVAA
Length1349
PositionTail
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.04
Grand average of hydropathy-0.728
Instability index68.54
Isoelectric point9.44
Molecular weight148689.43
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30567
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.46|      22|      30|     358|     387|       1
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  335-  375 (28.39/ 6.25)	Q......QQSQSamlqqstsmqqqptsapQQSNLPMQQHQQQQIigQ
  376-  406 (23.07/ 6.92)	QtnisnvQQTQL..............igqQTSATEMQQSQRVSI..Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.04|      29|      30|     205|     233|       2
---------------------------------------------------------------------------
  210-  236 (38.82/ 8.34)	QRPMQGRQQQQQLISQQ.....QHQ.TQNQlLY...
  484-  510 (36.43/ 7.25)	QAPLAMLQPQGQ...QP.....QHQsSQQQ.LLSQF
  821-  854 (36.79/ 7.42)	QNNINSKQPSSNAIQQQhfkqeQQQ.QQQQ.HMQNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     184.46|      34|      36|     913|     946|       3
---------------------------------------------------------------------------
  417-  446 (42.46/10.69)	HHLL.N.QHQ.QQQLGNQSN..MSGLQQQQQqQQ..Q
  447-  477 (40.97/ 9.99)	QQILGSL..SNVSNMQ.PHQRPMHIHQQPKT.TI..Q
  678-  710 (45.60/12.18)	KKVVPSQPPG.QQQFQHPGGHPQSMSQ..QQ.SSqvP
  913-  946 (55.43/16.83)	QHFLPNQRHSYYQQLKSGAAFPISSPQNFQA.SS..P
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     142.58|      30|      30|     271|     300|       4
---------------------------------------------------------------------------
  116-  147 (32.10/ 7.14)	ADPANQGQPLSVsmvNQPSarQQILSQ.....NIQNN
  263-  288 (45.65/13.53)	QSLMQTTQ.......LQSS..QQPLMQIG..SNFQSG
  545-  571 (31.93/ 7.06)	QNAIEQ.QKQFV....Q.S..QIGLQEVS..SSKALD
  753-  784 (32.90/ 7.52)	VPTPQQNMTNAL...QTGS..AIDSAQGSsfSSLQQG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.17|      15|      15|     855|     869|       6
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  523-  537 (25.37/ 6.84)	QQHPSSMQREMQQRI
  855-  869 (27.80/ 8.34)	QLKQQFQQRNMQQQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     164.19|      47|      87|     999|    1049|       7
---------------------------------------------------------------------------
  999- 1049 (76.28/42.17)	I.SG....ITSVPNAGRVGHQPTAVAPQAQS........LAVTTPGISASpllaEFTSPDGNQT
 1052- 1089 (30.40/ 9.06)	TnSGaakaITTERPFERLIKVIRSSTPKALS........SAVSDIG..................
 1092- 1138 (57.51/24.99)	V.SM....IDRIA.....GSAP...APGNGSraavgedlVAMTKCRLQAR....SFMSQDGSAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     149.99|      43|      76|      73|     115|      10
---------------------------------------------------------------------------
   29-   76 (50.41/28.37)	QPEARHRIVNKI..METLKRHL....P.ISV...PEGINELQ......................kiairfeekiytAASN
   77-  153 (55.68/32.22)	QPDYLRKISLKMLSMENKSQHSASINPSISN...SAVLNQNSadpanqgqplsvsmvnqpsarqqilsqniqnntlAMAQ
  154-  202 (43.90/23.59)	NPANL...SSALSSITGLSQSNISGVSQISNlqnMPGISQNS..........................annslgqtAA..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.50|      23|      66|     237|     260|      16
---------------------------------------------------------------------------
  237-  260 (40.27/18.32)	QHQFQQQYMkQKFQQS..SLLQPHVQ
  305-  329 (37.23/13.27)	QPGLQQNQL.STVQKSapSLLQQHPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.75|      40|     268|     949|     989|      17
---------------------------------------------------------------------------
  949-  989 (67.10/43.53)	SHHSSPQlDQHSLLSSQIKTGTPLQSANSPFDPSPSTPIAP
 1219- 1258 (69.65/41.13)	SNSAAPQ.GEGTIVKCVFTTVALCPSLKSQFASEHMSPILP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30567 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ISNLQNMPGISQNSANNSLGQTAAPDLYSNTQRPMQGRQQQQQLISQQQH
2) LQPHVQQQQSLMQTTQLQSSQQPLMQIGSNFQSGQSAMQQTQPGAIQSAVQPGLQQNQLSTVQKSAPSLLQQHPQSIARQQQQSQSAMLQQSTSMQQQPTSAPQQSNLPMQQHQQQQIIGQQ
3) MEGNSWRPAQGESAAASDGGSGDWRTQLQPEAR
4) NKKKVVPSQPPGQQQFQHPGGHPQSMSQQQSSQVPQVQQHDNYANQQMNLQGSTTSVQPAAMPSMQHGSVPLSTHFGVPTPQQNMTNALQTGSAIDSAQGSSFSSLQQGGIASMQQGGLVSGQGSINVPPQTNANVMSNGSMNSLQNNINSKQPSSNAIQQQHFKQEQQQQQQQHMQNQQLKQQFQQRNMQQQI
5) PISSPQNFQASSPQISHHSSPQLDQHSLLSSQIKTGTPLQSANSPFDPSPSTPIAPSPIPGDEKQISGITSVPNAGRVGHQPTAVAPQAQSLA
6) QQTQLIGQQTSATEMQQSQRVSIQQNNLLNMQQPHHLLNQHQQQQLGNQSNMSGLQQQQQQQQQQQILGSLSNVSNMQPHQRPMHIHQQPKTTIQQQQQNQQAPLAMLQPQGQQPQHQSSQQQLLSQ
7) SQHSASINPSISNSAVLNQNSADPANQGQPLSVSMVNQPS
179
255
1
676
934
383
95
228
376
33
869
1026
509
134










Molecular Recognition Features






MoRF SequenceStartStop




NANANA