<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30566

Description Uncharacterized protein
SequenceMADQQQQAPPSEPERGDAAASRARLSSRSPMGAEGHPAQLEAPPVPSPPQREEMMACVVALEAALLPCLPARELQAVDRSVHCSHQIDVERHAREFMEAAKKLQLYFVGLQREDEPTKEEMLRKEISVMEEELKTKTELIKKHQRLIDGWRKELKEQLEKHVTELETV
Length168
PositionHead
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.02
Grand average of hydropathy-0.735
Instability index67.80
Isoelectric point5.47
Molecular weight19092.61
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30566
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.61|      13|      19|      40|      52|       1
---------------------------------------------------------------------------
   40-   52 (27.12/13.79)	LEAPPVPSPPQRE
   61-   73 (23.49/11.10)	LEAALLPCLPARE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.66|      12|      15|     113|     124|       2
---------------------------------------------------------------------------
  113-  124 (20.93/11.98)	EDEPTKEEMLRK
  131-  142 (18.73/10.12)	EELKTKTELIKK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30566 with Med28 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MADQQQQAPPSEPERGDAAASRARLSSRSPMGAEGHPAQLEAPPVPSPPQREEM
1
54










Molecular Recognition Features






MoRF SequenceStartStop




1) EPERGDAAASRARLSSRS
12
29