<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30560

Description Uncharacterized protein
SequenceMAVFTGDETAAAAVAVAVCGGRGAGRSRRAVRWAAEHLVPHAHRVVLVHVIRAVTSIPSPSGERVPVDRLGKDVVEMYVQDLKSKAQQVLFPFRELCGTRNVETLVLEGENPAAALLEYVSISGTKNLVLGYSSFRFRRILKGPDVPTTVLKFSPDYCNIFAVSRRKLIMKFANQVSDDPSISTHIQTIKGKLFVQRRGTLHSRALSEPSSSISVRSFETLPSIGGHEEGELNNKNYGFLASIKYKTSFMFHSSRKDVSPAEVSNSRKESQNILAMYDQVCDDLVHAKKKFQSLSSEYSEVEKKLKNGLEREKVLEAIKEVEEAKQVSVKEAQHRHKAELVRISSELSKTIDGYFLNSKWCRRYSKNEIEVATDNFSEAKKIGEGGCGYVYKCNLDHTLVAVKVLRQDARDKEAEFLREVKILSQIHHPHLVLLLGVCLESGCLVYEYMENGSLDDHLFNRDGKRPLPWIIRFRILYEVACGLTFLHGNKPEPIVHRDLKPANILLNRNYVSKIGDVGLAKLLSDVVPDGLTEYRETILAGTFFYMDPEYQRTGTVRPKSDLYAWGVIALQLLTGKNPNGLIVSMENAIRGGTFSAVLDQSVKDWPLAEAERLAKLALQCSRLTCRERPDLDSEVLPELEDILNKGNAIINLKKHNIDAPKHYFCPILMEIMDDPYVAADGYTYEHKAIRAWLEKYDISPVNKIRLPHTSIIPNHSLRLAIQEWKSHVAFSTSWN
Length735
PositionTail
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.08
Grand average of hydropathy-0.273
Instability index43.10
Isoelectric point8.70
Molecular weight82726.98
Publications
PubMed=22801500

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30560
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.05|      25|      35|     250|     274|       1
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  250-  274 (42.10/30.15)	MFHSSRKDVS.PAEVSNSRKESQNIL
  284-  309 (35.95/24.66)	LVHAKKKFQSlSSEYSEVEKKLKNGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.57|      29|      52|     515|     543|       2
---------------------------------------------------------------------------
  515-  543 (50.46/39.36)	GDV.........GLA..KLLSDVVPDGL.TEYRETILAGTF
  554-  594 (35.11/24.94)	GTVrpksdlyawGVIalQLLTGKNPNGLiVSMENAIRGGTF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.74|      33|      41|      82|     122|       3
---------------------------------------------------------------------------
   84-  122 (48.03/41.69)	SKAQQVL....FPFRELCGTRNVETLVLEGeNPaaallEYVSI
  124-  160 (54.71/27.55)	GTKNLVLgyssFRFRRILKGPDVPTTVLKF.SP.....DYCNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.51|      21|      41|     180|     203|       6
---------------------------------------------------------------------------
  180-  203 (33.38/30.17)	PSISTHIQtikGKLFVQRRGTLHS
  222-  242 (39.13/26.43)	PSIGGHEE...GELNNKNYGFLAS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30560 with Med32 domain of Kingdom Viridiplantae
Unable to open file!