<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30559

Description Uncharacterized protein
SequenceMLSDDRMYSKGKFGRGPRELTGAVDLIKHYKLSALHDFFCKRTLPSSISDTHYLHNVVGETEIRKGEGMELGQLFQSAPYLRETTSQIQQFDLEILGQAFQLRDTAPIDLPSSEKGIPTISGKSIGDSKGKERKHRKHKDKDREKDKEHKKHKHRHKDRTKDKDKEKKKDKSGRHDSGGDHSTKHHEKKRKHDGNEDSVDNHKHKKTKVVGVLVFSASLLLYDYICWFHLTKAILTSEIFQHKMSYCQTCWWRRIVRRISFHAPEFFELAIIHLFTLMVPLSYNFS
Length286
PositionHead
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.09
Grand average of hydropathy-0.899
Instability index42.04
Isoelectric point9.55
Molecular weight33348.67
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30559
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      63.41|      15|      15|     137|     151|       1
---------------------------------------------------------------------------
  131-  146 (23.52/ 9.55)	KERKHrKHKDKDR..EKD
  147-  164 (20.07/ 7.14)	KEHKKhKHRHKDRtkDKD
  165-  180 (19.82/ 6.97)	KEKKKdKSGRHDS..GGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.53|      19|      24|      62|      84|       2
---------------------------------------------------------------------------
   62-   84 (28.45/39.08)	EIRKGEGMELGQLFQsapyLRET
   87-  105 (34.08/29.87)	QIQQFDLEILGQAFQ....LRDT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.09|      10|      20|     185|     194|       3
---------------------------------------------------------------------------
  185-  194 (19.86/ 9.86)	HHEKKRKHDG
  202-  211 (18.23/ 8.53)	HKHKKTKVVG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30559 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LRDTAPIDLPSSEKGIPTISGKSIGDSKGKERKHRKHKDKDREKDKEHKKHKHRHKDRTKDKDKEKKKDKSGRHDSGGDHSTKHHEKKRKHDGNEDSVDNHK
102
203










Molecular Recognition Features






MoRF SequenceStartStop




1) DREKDKEHKKHKHRHKD
142
158