<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30554

Description Uncharacterized protein
SequenceMCWALFSLVFQTHLVAINDRGLLELLFFHPFPVAYRLYLELLQRHAFIFTSQIKGPSFKKIMASINDVLHLSEKFGIQASEPGVLVVEYVFSILWQLLDATLDDEGLQELTPEKKAKWISRPHDMEIDGEDAFDEKKTEYNEKLQKANTIMAIELIWHFLNHKLQQFVQDIWKFGREWKPSHHQEICTLIAHGSLPSAGGCCHGSTSGALWIPVDLYLEDCLDASVAATDAIEVLSGLIKALRALNGSTWHDAFLAIWMASLRVVQRERDPHEGPVPRLDTRLCMLLSITILSIANIIEEEEATIIDEAELSNQWKEKTAGGKCRKDLVSSLQILGDYESLLVPPLSVTSVANQAAAKAMMFVSGLTGGSGYLENVAMSDKTVNCAGNMRHLIIEACISRNLLDTSAYFWPGYITARINQIPHSMPNQVPNWSALMKGAPLTSSMVNALVATPASSLAELEKIFEIAINGSDDDKISAATILCGASLFRGWNIQEHTVRFVVKLLSPPIPVDYAEGESHLISHGPMLNVVLTGISPVDCVQIFSFHGLVPELAGALMAICEVFGSCFPSISWTNTTGEEISVHTVFSNAFILLLRLWKFNHPPLEYCILGDGAPVGSQLTPEFLLLIRNSRVLSDAKLTKNRSNHGRLSTSTSSSSVHPIFVDSFPKLKTWYRQHQACLASTLSGLVHGTPVHQNVDALLNMMFRKFTKGGSQPVCPGTSGNSSLSSSSGPASDDNSFRPKLPAWDIMEAVPFVVDAALTACSHGRLYPRELATGLKDLADFLPASLATIVSYFSAEVTRGVWKPAFMNGTDWPSPAANLSTVEENIKRIVAATGVDVPSLAAGGSSLATLPLPLAAFVSLTITYKLDKASERFLNLAGPALENLAASCPWPSMPIVAALWAQKVKRWTDFLVFSASRTVFHHNNDAVVQLLRSCFTATLGLCTQISSNGGVGGLLGHGFGSHFSGGLSPVAPGILYLRVYRCIKDIFSLTENILSLLMDAVKEITESVVSKERSDKMKKTKYGMKYGQVSLAAAMTQVKVAAALGATFVWLSGGSGIVQCLIQEILPSWFLSVHELDLEGGNGGMVYTLSGYALAYFAVLSGMFAWGIDSVSVSKRRPRVIASHMDFLSSVLDGKISLGCNWVLWRAYVSGFLGLVVQCAPYWVLEVDLHILKKLSRGLKQWKEDELALALLKRGGVEAMGAAAEVILSNE
Length1212
PositionTail
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.09
Grand average of hydropathy0.184
Instability index37.54
Isoelectric point6.16
Molecular weight132259.24
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30554
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     300.71|      72|      72|     600|     671|       1
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  523-  597 (86.78/55.44)	.HGPMLNVV......LTGISPVDCvQifsfhgLVPELAgALMAICEVFGSCFPSISWTN........TTGEEISVHTVFSN.AF.IlLLRLW
  600-  671 (127.70/85.52)	NHPPLEYCI......LGDGAPVGS.Q......LTPEFL.LLIRNSRVLSDAKLTKNRSN...HGRLSTSTSSSSVHPIFVD.SF.P.KLKTW
  674-  745 (86.23/55.03)	QHQA...CLastlsgLVHGTPVHQ.N......V..DAL.LNMMFR......KFTKGGSQpvcPGTSGNSSLSSSSGPASDDnSFrP.KLPAW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.76|      15|      15|      17|      31|       2
---------------------------------------------------------------------------
   17-   31 (28.24/19.03)	INDRGLLELLFFHPF
   33-   47 (25.52/16.47)	VAYRLYLELLQRHAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.83|      15|      15|      63|      77|       3
---------------------------------------------------------------------------
   63-   77 (25.45/15.62)	ASINDVLHLSEKFGI
   79-   93 (25.37/15.55)	ASEPGVLVVEYVFSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.01|      18|      19|    1128|    1145|       4
---------------------------------------------------------------------------
 1128- 1145 (32.10/18.33)	FLSSVLDGKISLGCNWVL
 1149- 1166 (33.91/19.77)	YVSGFLGLVVQCAPYWVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.60|      36|     336|      95|     168|       5
---------------------------------------------------------------------------
   95-  134 (57.20/110.32)	WQ..........LLDATLDDEGLQELTPEKKAKWISrphdMEIDGEDAFD
  178-  223 (60.40/28.57)	WKpshhqeictlIAHGSLPSAGGCCHGSTSGALWIP....VDLYLEDCLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.95|       9|      15|     941|     951|       6
---------------------------------------------------------------------------
  941-  951 (13.21/ 9.66)	GLCTQISsnGG
  959-  967 (18.74/ 7.59)	GFGSHFS..GG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.58|      39|     336|     448|     520|       8
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  303-  342 (62.64/28.47)	ATIIDEAELSNQWKEKTAGGKCRKDLVSSlQILGDY...ESLL
  479-  520 (65.94/17.28)	ATILCGASLFRGWNIQEHTVRFVVKLLSP.PIPVDYaegESHL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.64|      16|     688|     355|     371|      10
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  355-  371 (26.38/17.46)	AAAKAMMFVsGLTGGSG
 1042- 1057 (31.26/16.59)	AAALGATFV.WLSGGSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30554 with Med33 domain of Kingdom Viridiplantae
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