<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30549

Description Uncharacterized protein
SequenceMNILSSFLTFLSILQKDENSSIEDYFGDEVLKVRACGMSFITLGINIRNGRFLLQSSKNILLPSTLVDCEEALNQGSFSATEVFTSLRSKSILNIFASTGRFLGLEVYDQSLTSLKIPNSILQVSDLLVMGFPQCANCYYLLMQVDKNFKLVFNLLESQSDQDGKSSSFGDANQIIRFSRIDIGQMKIVDDELNVSLFDWEKLHSLPNIGTFNQVGEHNIGVDAALQRPGFSQSAFSSVVDEVFDGYQGLNAGVSSSNFEGELQQSQVHKVKKVSSSLTSSSLFDEANNLKGLIQNSATGSLSSSSPVRISPIHKLSTLRSDQDISSLKPPYSADVVSAPSMTPNIIESSSLNVPRSNSSPLAKPYDNVAHKHVRKGRKQSLLDFVKLLPSFQGSEASFPQHKRRKILKLADSSSAASPSLPSIVSCRTGGCTYGDLLAEANHGITPSNLYVSVLLHVVRHCSLCIKHARLTSQMDSQDISYVEEIGLQIPSSNLWLKLPFARDDSWQRICLRLGKPGTMCWDVKINDPYFRELWELHKGSTTTLWGSGVRIANTSEIDSHICFDPEGVVLSYKSVEDDSIQRLVSDLRRLSNARLFAHGMRKLIGLGTDDSSDHITNLDLKVQTKGTGDLVDKLSEQMRKAFKIEAVGLMSLWFSYGSMPVIVHFVVEWEADKDCCTMHVSLDQLWPHTKFLEDFINGGEVASFLDCIRLTAGPLLALCGAIRPARIPVPVSAGHSLVQKQNNFMSSHGLMANPSATAIQVSSSAAATTTLMTQLGSNSLQAAAVLSATGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFAVDMRCFAGDQVWLQPATPPKRGPAAGGSLPCPQFRPFIMEHVAQGLNALEPNFSGASHAGVQLGSSNANVNSVSQPLAPNTNRRAGSAMLASSGLASGISGLPLRISPGTCFPVHVKGELNTAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPDLIKEILGILRDNEGGLLNLDQEQPALRFFVGSYVFAVSVHRVQLLLQVLSLRRFHHQQQQQQQQNQSATQEELAPGEINEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLISWKKGLSLAHGGDIATAQRSRIELCLENHSGSVLENSETTSCSKSNIHHDRVHNLVDFALTFVLDPAHIPHMNVAGGAAWLPSCVSVRLRYSFGENAHVSFLAMEGSHGGRACWSRHEDWEKCKQRMTRAAEYANGNSAGDASQGRLRLVADALQRTLQVALQQLRDCSLSSSSIGT
Length1288
PositionTail
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.07
Grand average of hydropathy-0.081
Instability index51.29
Isoelectric point7.57
Molecular weight140606.58
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30549
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.34|      16|      23|     326|     344|       1
---------------------------------------------------------------------------
  326-  344 (25.88/25.60)	SSLKPPYSAdvvSAPSMTP
  350-  365 (29.46/19.28)	SSLNVPRSN...SSPLAKP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.15|      39|      42|     237|     276|       2
---------------------------------------------------------------------------
  237-  276 (60.05/45.68)	SSVVDEVfDGYQGL..NAGVSSSNFEGELQQSQVHKVKKVSS
  281-  321 (59.10/39.40)	SSLFDEA.NNLKGLiqNSATGSLSSSSPVRISPIHKLSTLRS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     103.42|      23|      23|     474|     496|       3
---------------------------------------------------------------------------
  474-  496 (39.25/22.51)	QMD.SQDISYVEEIGLQI..PSSNLW
  498-  522 (30.74/16.09)	KLPfARDDSW.QRICLRLgkPGTMCW
  523-  546 (33.43/18.12)	DVK.INDPYFRELWELHK.gSTTTLW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.71|      28|     386|     781|     812|       4
---------------------------------------------------------------------------
  785-  812 (50.22/31.69)	AVLSATG..RGGPGLVPSSLLP...FDVSVVLR
  914-  942 (27.07/ 7.22)	AMLASSGlaSGISGL.PLRISPgtcFPVHV...
 1187- 1201 (22.43/ 6.77)	..........GGAAWLPSC........VSVRLR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.32|      38|     119|     709|     749|       5
---------------------------------------------------------------------------
  709-  749 (64.04/45.15)	IRLTAGPLLALCGAIRPARIPvpvSAGHSLVQKQ.NNFMSSH
  829-  867 (73.28/44.01)	MRCFAGDQVWLQPATPPKRGP...AAGGSLPCPQfRPFIMEH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.21|      15|     706|     405|     427|      10
---------------------------------------------------------------------------
  387-  401 (26.71/14.44)	KLLPSFQGSEASFPQ
  409-  423 (24.50/13.43)	KLADSSSAASPSLPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.23|      23|      42|     961|    1001|      12
---------------------------------------------------------------------------
  961-  987 (35.77/47.04)	GGWVPLAALKKVLRgilkYLGVLWLFA
 1005- 1027 (40.46/15.70)	GGLLNLDQEQPALR....FFVGSYVFA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30549 with Med14 domain of Kingdom Viridiplantae
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