<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30548

Description Uncharacterized protein
SequenceMASLPGSVDYWRKFFRSADSDIFGVMEHAIVVAASDYPEEFRSRRDGLVEKFFAALLPRCLGCDRVDPRGAEVEEGRGSVRRVGEKENKVDSSNDGPESSTRVVSNYTYDEAEALTEEIEEEGQIVEEVLSIKEILANHHEESDNVLFELLRRLQLMELSVDVLKVTEIGRAVNGLRKHNSQQIRHLVRALIDGWKVLVDEWVSATSAIADNSPDSVNPSIVDDEEGLPSPPLDEGALFTAQTTSIRLSEFFDGMDDDGSEQEAQRSILPEENIRRQESQQLAISEEKLHNNRQELETRQSKPHNISIEQAKSQSIMSKQSKPVIAESGPGRPVKYTSELNVCSKVKPGPRQDTATLRRKPPMIPQNEPMYFEEASVRAKLEFAKRKLHEGYRQAENAKKQRTIQVMELHDIPKQAHNSRQPILKSKNHFRNWANGWH
Length438
PositionUnknown
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.06
Grand average of hydropathy-0.737
Instability index61.79
Isoelectric point5.43
Molecular weight49656.94
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30548
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     103.04|      33|      35|     248|     282|       1
---------------------------------------------------------------------------
  248-  282 (49.44/35.49)	LSEffDGMDDDGSEQEAQRSILPEENIRRQESQQL
  284-  316 (53.60/31.66)	ISE..EKLHNNRQELETRQSKPHNISIEQAKSQSI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.84|      13|      16|     327|     340|       2
---------------------------------------------------------------------------
  327-  340 (19.44/16.57)	ESGPGrPVKYTSEL
  345-  357 (23.40/14.47)	KVKPG.PRQDTATL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.92|      14|      18|     387|     400|       5
---------------------------------------------------------------------------
  387-  400 (24.34/16.46)	KLHEGYRQAENAKK
  408-  421 (25.58/17.64)	ELHDIPKQAHNSRQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30548 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EEGRGSVRRVGEKENKVDSSNDGPESSTRV
2) EFFDGMDDDGSEQEAQRSILPEENIRRQESQQLAISEEKLHNNRQELETRQSKPHNISIEQAKSQSIMSKQSKPVIAESGPGRPVKYTSELNVCSKVKPGPRQDTATLRRKPPMIPQNEPMYF
3) FAKRKLHEGYRQAENAKKQRTIQVMELHDIPKQAHNSRQPILKSKNHF
74
250
383
103
372
430










Molecular Recognition Features






MoRF SequenceStartStop




1) ANGWH
2) VDYWRKFFR
434
8
438
16