<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30545

Description Uncharacterized protein
SequenceMDVFTSLKSKSILNLFASTGRFLGLEVYDQSLTTLKIPKSILNGSDILIMGFPQCANSYYLLMQVDKDFKPVFSLLELRSDQDGKSSSFTDAIQVIRFNRIDIGQMKIVDDELNMSLFDWEKLCSLPKLGTFIQVVEHDFGVDSALQFPGFSQSSFSSVVDEVFKFEKGINTGVTSTNLEGELQQSQVHKVGKASSSFTSSSNSLHVTSNLKGIIQNGATGSLSSSSPVRISSVHKLSTLRSDQDRSSLRYPYSADVGQYPPADEPPKVLNMIEGNGPGQLLPPLRTTCPPISAHSMAPNDIVNSSPGILVGSSEVTRSNTLLLANPCQTPEFGATRSDDNGAHKHERKGRKRSLVDFINLLPSFQGSEASSLQHKRQKISRLANSHAASSPPLPSLLACRTGGHTFGDLLGEANHGISPSNLYVSVLLHIVRHCSLCIKHAQLTSQMDALNISYVEEVGLRIPSLNLWLKLPFARDDSWQRICLRLGKPGTMCWDVKINDPYFRELWNLNKGSTTTSWGSGVRIANTSEVDSHIHYDPEGVVLSYKSVEDDSVQRLVSDLRRLSNARLFARGMRKLIGLGTGDRIDDNTNSDSKAQAKGTGEIVDKLSEQMRKAFKIEAVGLMSLWFSYGSMPVIVHFVVEWEADKEGCTMHVSPDQLWPHTKFLEDFINGGEVASFLDCIRLTAGPLLALCGAIRPARIPVPVSVGHSLVQKQNSFMSSHGLMANPSSTAIQLPSSSPTTTTLMTQLGSHSLQNAAVLSAAGRGGPGLVPSSLLPFDVSVVLRGPYWIRIIYRKKFAVDMRCFAGDQVWLQPATPPKGGPAAGGSLPCPQFRPFIMEHVAQGLNALEPNFSAASHAGGHLGSSNANVSSVSQPLASNANRISVASSAGISRPSSVIANQVVPLRISPGTGFPVHVKGELNAAFIGLGDDGGYGGGWVPLAALKKVLRGILKYLGVLWLFAQLPDLLKEILGSILRDNEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQQQQQQNQNTSQEELAPGEINEICDYFSRRVASEPYDASRVASFITLLTLPVSVLREFLKLISWKKGLSQAHGGDVASAQRSRIEICLENHSGSVLDENSEATSCSKSNIHHDRAHNLVDFALTFVLDPAHIPHMNAAGGAAWLPYCVSVRLRYSFGDNAHVSFLGMQGSHGGRACWSRQEDWEKCKQRMARAAEFANGNSAADVSQGRLRLVADTLQRTLQMLLQQLRDGAVPLSSSGT
Length1266
PositionTail
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.07
Grand average of hydropathy-0.149
Instability index45.57
Isoelectric point8.34
Molecular weight137769.07
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30545
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.49|      18|      18|     880|     897|       1
---------------------------------------------------------------------------
  880-  897 (28.68/14.42)	ANR.ISVASSAGISRPSSV
  899-  917 (27.81/13.75)	ANQvVPLRISPGTGFPVHV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.70|      35|     160|      72|     150|       2
---------------------------------------------------------------------------
   72-  115 (51.76/107.55)	VFSLLELRSDQDgKSSsftdaiqvIRF.NRIDIGQMKIVDDE...LNM
  234-  272 (56.94/22.05)	VHKLSTLRSDQD.RSS........LRYpYSADVGQYPPADEPpkvLNM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     205.20|      67|     165|     443|     525|       3
---------------------------------------------------------------------------
  443-  525 (99.93/87.88)	QLTSQM.DALNIsyvEEVGLripsLNLWL...KLP....FARDdsW...QRICLRLGKPGTMcWdvkindPYFRELWNLNKGSTTTSWGSGVRI
  607-  684 (105.27/56.61)	KLSEQMrKAFKI...EAVGL....MSLWFsygSMPvivhFVVE..WeadKEGCTMHVSPDQL.W......PHTKFLEDFINGGEVASFLDCIRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.25|      14|      16|     840|     853|       4
---------------------------------------------------------------------------
  840-  853 (24.75/15.26)	HVAQGLNALEPNFS
  857-  870 (23.50/14.05)	HAGGHLGSSNANVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.11|      18|      22|     938|     958|       5
---------------------------------------------------------------------------
  934-  952 (28.28/23.47)	Y.GGGWVpLAALKKVLRGIL
  954-  972 (28.84/17.95)	YlGVLWL.FAQLPDLLKEIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.82|      22|     339|     812|     834|       7
---------------------------------------------------------------------------
  812-  834 (41.42/25.87)	LQPATPPKGGpAAGGS..LP.CPQFR
 1153- 1177 (35.40/16.95)	LDPAHIPHMN.AAGGAawLPyCVSVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.67|      13|      31|     141|     154|       8
---------------------------------------------------------------------------
  141-  154 (20.27/13.45)	GVDSAlQFPG.FSQS
  173-  186 (18.40/ 7.41)	GVTST.NLEGeLQQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.63|      10|      23|     192|     202|       9
---------------------------------------------------------------------------
  192-  202 (13.75/10.26)	GkASSSFTSSS
  218-  227 (17.87/ 8.55)	G.ATGSLSSSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.80|      11|      27|       4|      14|      10
---------------------------------------------------------------------------
    4-   14 (19.94/12.80)	FTSLK.SKSILN
   32-   43 (15.86/ 8.65)	LTTLKiPKSILN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     125.56|      40|     395|     288|     330|      13
---------------------------------------------------------------------------
  288-  330 (64.74/48.77)	TCPPISA..HSMAPNDIvnSSPgILVGSSEVTRSNTL.....LLANPCQT
  685-  731 (60.81/35.43)	TAGPLLAlcGAIRPARI..PVP.VSVGHSLVQKQNSFmsshgLMANPSST
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30545 with Med14 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) SSLRYPYSADVGQYPPADEPPKVLNMIEGNGPGQLLPPLRTTCPPISAHSMAPND
2) TLLLANPCQTPEFGATRSDDNGAHKHERKG
247
321
301
350










Molecular Recognition Features






MoRF SequenceStartStop




NANANA