<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30543

Description Uncharacterized protein
SequenceMEKGDRLLHNSVTTVALAINGTSNSRHIVQWALNKFISGGGVMFKLLHVRSRIKMVPSPIGNLPVEQVQDDVASAYKKEEEWKTEVMLRPYKNMCSAKQIETEVVILEADDVAEAISKEVTENSISMLVIGGSSKNAIIRKLWGGNLSSRIAECTPSFCTVYVVSRGKLSSVRASAFGTDEIAPTSVTKDSIKEENDSSAVFYSSSNNSPILKSEMIDLDTEVNFPSQLPCLPQLQQKLAYASKDYESSNSANSLLTRNTSLFEDYRVSSSNTSETQYSNSIASLRSYQTDKSWSSNMSFYRSTEYSQSGNEGDIHLELERLRTEINHFMRIYKLAPDESISASQQLNDIHTHHTEEILKLQEIWSRLEKTTKMAQQEKERREATEKEAEYVNGCTEIEVLLGKDVEKSASHEVSEKQSPEKELACSSEPYVKYTWEEIVAATLSFSDALKIGVGASGTVYWGSFHHTVGAIKVLNSNEGYTTRQFKQELEILSRVRHPHVLLLLGACTEKGCLVYEYMENGSLEDRLQCKNNTLPLPWFCRFRIAWEVASALIFLHNSKPEPIVHRDLKPANILLDNNFVSKIGDAGLSTLFPTLNMPLSTMYKDTDPVGTFFYMDPEYQRTGLVSPKSDTYALGMVILQLLTAKSPMGLALIVETALERDCLMDILDSKAGQWPKAEAKELAILGLSCLELRRKDRPDLKDQVLPVLERLKAIAEQAYDSALHDSSVPPNHFICPILKFVQVVMDDPCIAADGYTYNRNAIETWLSRNDTSPMTNLLLPTQEIICNNSLLSAIKDWKARTQ
Length803
PositionTail
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.07
Grand average of hydropathy-0.324
Instability index50.88
Isoelectric point5.48
Molecular weight90009.18
Publications
PubMed=22801500

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30543
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     215.84|      58|     168|     525|     585|       1
---------------------------------------------------------------------------
  192-  229 (45.43/23.85)	.....................IKEENDSSAVFYSSSNNSPI....LKSEMIDLDTevNFPSQL
  525-  584 (96.33/78.32)	EDRLQCKNNTLPLpwFCRFR.IAWEVASALIFLHNSKPEPIVHRDLKPANILLDN..NFVSKI
  696-  747 (74.08/50.06)	KDRPDLKDQVLPV..LERLKaIAEQAYDSALHDSSVPPNHFICPILKFVQVVMD.........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.83|      13|     166|      63|      80|       2
---------------------------------------------------------------------------
   63-   79 (17.88/24.38)	LPVeqvqDDVASAYKKE
  107-  119 (21.95/10.12)	LEA....DDVAEAISKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     116.43|      37|     166|     294|     330|       3
---------------------------------------------------------------------------
  259-  296 (53.04/28.51)	NTSLFEDYRVSSSNtSETQYSNSIASLRSYQTDKSWSS
  297-  333 (63.39/35.33)	NMSFYRSTEYSQSG.NEGDIHLELERLRTEINHFMRIY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.60|      44|     110|      10|      55|       4
---------------------------------------------------------------------------
   10-   55 (72.08/58.02)	NSVTtvALAINGTSNSRHIVQ.WA..LNKFISGGGVMFKLLHVRSRIKM
  123-  169 (68.52/48.57)	NSIS..MLVIGGSSKNAIIRKlWGgnLSSRIAECTPSFCTVYVVSRGKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     160.75|      43|     110|     353|     397|       5
---------------------------------------------------------------------------
  353-  397 (68.57/50.21)	HHTEEILKLqeIWSRLEK.TTKMAQQEKE..RREATEKE.....AEYVNGCTE
  402-  437 (28.00/13.13)	...............LGKdVEKSASHEVS..EKQSPEKElacssEPYVKYTWE
  466-  510 (64.18/40.77)	HHTVGAIKV..LNSNEGY.TTRQFKQELEilSRVRHPHV.....LLLLGACTE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.30|      30|      38|     596|     625|       7
---------------------------------------------------------------------------
  596-  625 (54.58/31.61)	LNMPLSTMYKDTDPVGTFFYMDPEYQRTGL
  635-  664 (47.72/26.87)	LGMVILQLLTAKSPMGLALIVETALERDCL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30543 with Med32 domain of Kingdom Viridiplantae
Unable to open file!