<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30540

Description Uncharacterized protein
SequenceMASSSGSLDYWRKFFRSANSDIFEVMEHAILVAASDYPQEFRSRRHQIVEKLFAVLLPRCYGCDRVAEGEEGDRSVKRDGEKESKVDSSNDGPEDLNRIVSNYSYDEAEALTEEIEEESQIVGEVLRIKEIFANHRDESDSILFESLRRLQLMELSVEVLKATEIGKAVNCLRRHNSKQIRHLVRTLIDGWKVLAEEWVRATAAIADNSPDSINPPMEDEEGLPSPPLDEGFLFASQTTSMQLSEFFDEMDDDGNFRNNGEFEKPWENGGSPENDVPHRKQQPPKQYVIPKEKAETRRQEPSQFITPEGKEVTRRQLPPHSAIVEDKSQMKQQKTVTRPGKPQDPGIGQGRCEGIANRQSKPVILDSGPGRPPKLPHTQNAGRQMNPKHHQNSGALRRKLLVVPQDKTKCSEESSIREKLELAKRKLHEGYQQAENAKKQRTIQVMELHDLPKQVHNRHPVLKSRNQIRSWANGRH
Length476
PositionUnknown
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.05
Grand average of hydropathy-0.947
Instability index59.37
Isoelectric point6.35
Molecular weight54336.24
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP30540
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     136.10|      32|      32|     279|     310|       1
---------------------------------------------------------------------------
  279-  310 (57.01/30.18)	RKQQPPKQYVIPKEKAETRRQEPSQ...........FITPEGK
  314-  341 (46.49/23.46)	RRQLPPHSAIV.EDKSQMKQQKT..............VTRPGK
  371-  407 (32.60/14.60)	...RPPK...LPHTQNAGRQMNPKHhqnsgalrrklLVVPQDK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.59|      29|      31|     102|     131|       2
---------------------------------------------------------------------------
  102-  131 (42.41/35.27)	NYsYDEAEALTEEIEEESQIVG...EVLRIKEI
  134-  165 (42.18/29.74)	NH.RDESDSILFESLRRLQLMElsvEVLKATEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.36|      15|      18|     245|     259|       3
---------------------------------------------------------------------------
  245-  259 (28.17/14.44)	EFFDEMDDDGNFRNN
  261-  275 (29.19/15.17)	EFEKPWENGGSPEND
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.06|      11|      18|     426|     436|       4
---------------------------------------------------------------------------
  426-  436 (19.84/13.10)	KLHEGYQQAEN
  447-  457 (20.22/13.48)	ELHDLPKQVHN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30540 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AIADNSPDSINPPMEDEEGLPSPPLDEGFLFA
2) LSEFFDEMDDDGNFRNNGEFEKPWENGGSPENDVPHRKQQPPKQYVIPKEKAETRRQEPSQFITPEGKEVTRRQLPPHSAIVEDKSQMKQQKTVTRPGKPQDPGIGQGRCEGIANRQSKPVILDSGPGRPPKLPHTQNAGRQMNPKHHQNSGALRRKLLVVPQDKTKCSEESSIREKLELAKRKLHEGYQQAENAKKQRTIQVMELHDLPKQVHNRHPVLKSRNQIRSWANGRH
204
243
235
476










Molecular Recognition Features






MoRF SequenceStartStop




1) GALRRKLL
2) LDYWRKFFR
3) QLSEFFD
4) WANGRH
394
8
242
471
401
16
248
476