<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30538

Description Uncharacterized protein
SequenceMDPEGKKFGRGPRELTGAVDLINHYKLLTHHDFFCKRNLPLSILDTHYLHNVVGETEIRKGEGMELDQLFHNAPYLRESTAHIQPFDLELLGQAFLLRDTAPIDLPSAAKGTPTISSKSKGDSKDKDRKHKKHKDKDKNKDKDKDKEHKKHKHRRKDRSKDKDKDKEKKKDKGGHHDSGGDHLKHHEKRKHEGNEDSTDTHKHKKSKHKNSEVVAVGGKILPADKGR
Length227
PositionHead
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.04
Grand average of hydropathy-1.471
Instability index39.48
Isoelectric point9.57
Molecular weight26009.99
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
transcription factor binding	GO:0008134	IBA:GO_Central

GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30538
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.99|      17|      17|     130|     146|       1
---------------------------------------------------------------------------
  130-  146 (33.63/12.09)	HKKHKD..KDKNKDKDKDK
  148-  166 (26.98/ 8.22)	HKKHKHrrKDRSKDKDKDK
  182-  198 (25.39/ 7.29)	HLKHHE..KRKHEGNEDST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.39|      16|      20|      69|      88|       2
---------------------------------------------------------------------------
   69-   88 (22.28/29.63)	LFHNAPYLREsTAhiqPFDL
   90-  105 (29.11/20.26)	LLGQAFLLRD.TA...PIDL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.14|      12|      22|      13|      25|       3
---------------------------------------------------------------------------
   13-   25 (16.95/16.63)	RELTGAVdLINHY
   37-   48 (22.19/15.48)	RNLPLSI.LDTHY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.07|      10|      31|     168|     178|       4
---------------------------------------------------------------------------
  168-  178 (14.74/ 9.19)	KKKdKGGHHDS
  202-  211 (18.33/ 6.97)	KHK.KSKHKNS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30538 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APIDLPSAAKGTPTISSKSKGDSKDKDRKHKKHKDKDKNKDKDKDKEHKKHKHRRKDRSKDKDKDKEKKKDKGGHHDSGGDHLKHHEKRKHEGNEDSTDTHKHKKSKHKNSEVVAVGGKILPADKGR
101
227










Molecular Recognition Features






MoRF SequenceStartStop




1) KDKDRKHKKHKDKDKNKDKDKDKEHKKHKHRRKDRSKDKDKDKEKKKDKGGHHDSGGDHLKHHEKRKHEGNEDSTDTHKHKKSKHKNSEVVAVGGKIL
124
221