<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30535

Description Uncharacterized protein
SequenceMQQRYSAASCGGGVSNSAVGGASSRENARVESSYSASNFSLNSRRQSQVPSYKLKCDKEPLNSRLGPPDFYPQTPNCPEETLTREYLQSGYKETVEGIEEAREIALTQGLSFSKFEHILKFKEALRKRLRVINESRAQKRKAGQAYGVPLSGQLLTKAGVFPEQKPCNEDARRRWIEALSQQNKQLRSLAEHVPHGYRRKALFEVLIRHNVPLIRAAWFIKVNYLNQVRPASTSVPSDKAQFARSDLLSKDVVEYLQQLLDEIFPKDGSNIPTPNKNQSSQSTMVVPYLTPQKNDSSSSTPDEEPSLDFKWWYMCHLVQWHLAEGLLLPSPIIEMIFNQLQEKESLEAFELLLPLLVDMIESVALSQTYVRMFMDLFVQKVQDPSSSILSSVDTSQKLSLVDAMVGVVRYLIVAVPDTFVALDCFPLSSNVVPDLRYRNTFLKLPECVDNVQFDTRDAYLRYLSCGYVVSSIQKRASNLSNIVNPSLQAHGAAKVLLALDRALITGNVMIAYNSLFEDLSDVAVEERWIAEISPCLRSSLKWIGTIGLSLICSIFFLCEWATCDYRNFRTSLPNDLKLTGRKEFSQIYFAVLLLKLKMEDLLSLTQSIENVSVPRNNSRSLHDRKNKREIFQGPGPLHDIVVCWLDQHEIGKAGSFRCVEIFLVETIRNGIFFPHAYVRQLIASGIMDKNESLLDMERQRRHRRILQQLPGSCLFDVLEEARTTEVHLGDVCSVFSVQKYIDSSSPGHAKTKDQITQLKVLISRFLRFSLHFAMPMETCLDDSQGISKRTPGSLESKVDLTEETPGCEECRKGKWQKLVDDRSSAPEGFSSSHSDDEDTWWVKKGSKSQESFKVELPLKPAKPASRGRQKTVRKTQSLAQLAAARIESSQGASTSHVCDNKVSCPHHRPVTDSEVPKEANQMISGNQSDIGKALKQLRLLERRSISIWLLKSIRQLVEGNEKAASKVSNCTDVYSVPQPDDRNAARWKLGEDEILFILYVLDISGDFISAIKFLIWLIPKVLCGPSIVVQGVRNAVFPKSREFQVCQVGEAFLFSSLQRYENVLRAADLLPEALTASIHRSLATITSNGRPYGSVAFAYARNLLKKYRDVTNVSKWEKSFRATCDQRVLAELDTGRSVDGEFMFSPGVSAGITDADEHIRQRMNGRMSRIGTNMKELVQRHVEEAVHYFYGKERKLFAAPTSRIHSPEKWDDVYQIAHDIVCGLVECIRQIGGASIEGDPSVVASAVSAIIGSIGLAVVKLPDFTTSSNYQAFPSSINSLNCVRHILQIHIASLCLLKDALGDRLNRVFEIALAAEASSAISTTCAPGKAHRNQFQLSPETNEIYQNHSNELLNNSTKLIVGKAAKAAAAISALVLGAIVRGVSSLDRMITAFRLKEGLDVLQFIRSARSSSNGISRTIGMMKLDYCIEVYVHWFRLLVGNCRTVFDGLVAEMLGESYILGLLRMQQLLPLSLVFPPAYSIFAMVIWRSYILNSNIASREDILLYQCFSTAIGDAIRHKPFREVFFQNTHGFYDLLTNDSGDSEFAAMLELHNPDKHLKTMAFVPLRARLFLNALIDGKMPAFTVAREDGSWVAGPAEPRSYAETEASLLDKLIHVLDTLQPAKFHWQWLELRLLLNEQALIEKIETHNMPFVEAIRSLSPSAENFALSESEKKFTEIILTRILARPEAAPLYSEVVHLLGKLLQESLVMDTKWILAGPDVLLGRKSIRQQLVSVAQRKGFPTKARFWKPWGWPSSLSDLAANRGEKRKFEAICVEEGEVVDESIDVRKSSKVIHSMDAEGCSSSQQYITEKALAELILPCIDRSSNELRNLFTSELIKQMGAIDQQINTVTSNGCKSSVNPEPSSNKGSSRKVIRGGSPVLGRRPTDSAPPSAAALKTSLCLRLQFLLRLLPIIYEDRNMRQMLAPIILRLLGTRLIYEDADLCISPIHVDPSKREFESSSEVPLLNHSSDSLFDRLLAVLHGLLSSYKPSWLKPKPVSKSAHKSLRDFSPFDREVAESLQNVLDRMELPATIRRRIQAAMPLLVPSRPISAPCHLPTLSSAALTSLQPSTPSPGPHQRIIPSRASNSSSGRSKSLASQDLDMEIDLWTLLEDGTSSAPSMSSGSNMGGTSGDHSNLKACSWLKGTVRVQRTDLTYIGALDEDS
Length2165
PositionKinase
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.07
Grand average of hydropathy-0.205
Instability index51.81
Isoelectric point8.48
Molecular weight241759.20
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30535
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.36|      19|      22|    1908|    1928|       1
---------------------------------------------------------------------------
 1908- 1928 (31.04/23.18)	LLRLLP..IIYEDRNMrqMLAPI
 1929- 1949 (30.32/16.15)	ILRLLGtrLIYEDADL..CISPI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.47|      21|      22|    2041|    2062|       2
---------------------------------------------------------------------------
 2041- 2062 (34.84/24.09)	AMPLLVPSRPISAPcH...LPTLSS
 2064- 2087 (34.63/18.15)	ALTSLQPSTPSPGP.HqriIPSRAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.64|      13|      22|     323|     336|       3
---------------------------------------------------------------------------
  323-  336 (19.59/14.07)	AEGLLLPsPIIEMI
  348-  360 (23.05/11.88)	AFELLLP.LLVDMI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.34|      11|      16|     273|     283|       4
---------------------------------------------------------------------------
  273-  283 (21.84/13.57)	TPNKNQSSQST
  290-  300 (21.50/13.23)	TPQKNDSSSST
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.01|      16|      16|     432|     447|       5
---------------------------------------------------------------------------
  405-  424 (21.41/10.17)	VGVVRYlivavPDTFVAL.DC
  432-  447 (29.95/17.22)	VPDLRY.....RNTFLKLPEC
  448-  465 (22.64/11.18)	VDNVQF...dtRDAYLRYLSC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.21|      15|      18|     701|     717|       6
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  701-  717 (23.83/17.75)	RHRRIlqQLPGSC.LFDV
  722-  737 (21.38/ 9.45)	RTTEV..HLGDVCsVFSV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.62|      22|     528|    1437|    1458|       8
---------------------------------------------------------------------------
 1437- 1458 (39.79/29.92)	LLVGNCRTVFDGLVAEMLG..ESY
 1966- 1989 (33.83/24.07)	LLNHSSDSLFDRLLAVLHGllSSY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     150.08|      50|     402|     918|     968|       9
---------------------------------------------------------------------------
  918-  968 (77.50/48.40)	EANQMISGNqSDIGKALKQLRLLERRSISIW......LLKSIRQLVEGN.EKAASKVS
 1316- 1372 (72.58/41.02)	EASSAISTT.CAPGKAHRNQFQLSPETNEIYqnhsneLLNNSTKLIVGKaAKAAAAIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.74|      42|    1206|     476|     523|      10
---------------------------------------------------------------------------
  476-  523 (62.40/56.92)	ASNL.SNIVnpslqaHGAAKVL...LALD.RALITG.NVMIAYNSLFEDLSDVA
 1689- 1736 (51.34/33.62)	AAPLySEVV......HLLGKLLqesLVMDtKWILAGpDVLLGRKSIRQQLVSVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.36|      12|      22|    1816|    1827|      11
---------------------------------------------------------------------------
 1816- 1827 (22.53/12.43)	ELI..LPCIDRSSN
 1836- 1849 (16.84/ 7.50)	ELIkqMGAIDQQIN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.47|      21|      22|     785|     805|      12
---------------------------------------------------------------------------
  785-  805 (33.55/20.88)	GISKRTPGSLESKVDLTEETP
  806-  826 (37.93/24.65)	GCEECRKGKWQKLVDDRSSAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.83|      16|      22|    1245|    1260|      14
---------------------------------------------------------------------------
 1245- 1260 (24.85/14.43)	SAVSAIIGSI.GLAVVK
 1268- 1284 (24.98/14.54)	SNYQAFPSSInSLNCVR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30535 with Med12 domain of Kingdom Viridiplantae
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