<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30533

Description Uncharacterized protein
SequenceMFVSLPVVETDLDCSSSPTPNPLYITVEAPSKVLLIERECFIGRFGGVEASRRGATMGSSSRNRGSMILLGLLVAGSLFAFSVAKEEATKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNLAAVNPERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVNKDGKPYIQVKIKDGEVKVFSPEEISAMVLTKMKETAEAFLGKKIKDAVVTVPAYFNDAQRQATKDAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLRRECERAKRALSNQHQVRVEIESLYEGLDFSEPLTRARFEELNNDLFRKTMGPVKKAMEDAGLEKHQIDEIVLVGGSTRIPKVQQLLKDYFDGKEPNKGVNPDEAVAYGAAVQGSILSGEGGEETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTIVSIQVFEGERSLTKDCRLLGKFDLSGIPPAPRGTPQIEVTFEVDANGILNVKAEDKGTGKSEKITITNEKGRLSQEEIDRMVREAEEFAEEDRKVKEKIDARNQLETYVYNMKNTVNEKDKLADKIENEEKEKIEAALKDALEWLDDNQSAEKEDYEEKLKEVEAVCSPIISAVYQRSGGAPGGSDGGDEDDSHDEL
Length722
PositionUnknown
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.06
Grand average of hydropathy-0.402
Instability index32.49
Isoelectric point5.11
Molecular weight79510.34
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
cytoplasm	GO:0005737	IBA:GO_Central
endoplasmic reticulum chaperone complex	GO:0034663	IBA:GO_Central
endoplasmic reticulum lumen	GO:0005788	IBA:GO_Central
membrane	GO:0016020	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
endoplasmic reticulum unfolded protein response	GO:0030968	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central
ubiquitin-dependent ERAD pathway	GO:0030433	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30533
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      88.38|      25|      26|     637|     661|       2
---------------------------------------------------------------------------
  615-  635 (20.19/ 8.83)	.....E..EDRKVKEKIDARNQlET.YVY
  637-  661 (38.88/23.79)	MKNTVN..EKDKLADKIENEEK.EK.IEA
  663-  690 (29.31/16.13)	LKDALEwlDDNQSAEKEDYEEK.LKeVEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      30.91|      10|      32|     194|     205|       3
---------------------------------------------------------------------------
  194-  205 (14.03/14.46)	KIKDGEVKVfsP
  227-  236 (16.88/ 9.31)	KIKDAVVTV..P
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     300.73|     101|     193|     244|     351|       4
---------------------------------------------------------------------------
  244-  351 (148.13/116.53)	RQATKDagIIAGLNVARIINePTaAAIAYG.......LDKKGGE..KNILVFDLggGTFDVSILTIDnGVFEVLATNGDT..HLGGEDFDQRIMEYFIKLIKKKHG.KDISKDNRALGKL
  435-  547 (152.60/95.26)	QQLLKD..YFDGKEPNKGVN.PD.EAVAYGaavqgsiLSGEGGEetKDILLLDV..APLTLGIETVG.GVMTKLIPRNTVipTKKSQVFTTYQDQQTIVSIQVFEGeRSLTKDCRLLGKF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.80|      12|      15|     369|     381|       5
---------------------------------------------------------------------------
  369-  381 (16.41/13.98)	RVEIESLYEGLdF
  387-  398 (21.38/12.65)	RARFEELNNDL.F
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30533 with Med37 domain of Kingdom Viridiplantae
Unable to open file!