<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30531

Description Uncharacterized protein
SequenceMVSMELFNIVEDIKNVSKAFVVHPRNVNAENATILPVMLSSKLLPEMEAEDNTKREQLLYGISGLPVHMQIEKLKARIDMIGAACEAAEKVISDCRKAYGLGSRQGSTLVPTLDKVQAAKIQEQENLLRAAVNFGEGLRIPVDQRQLPASLPSHLVDVLTVGDGAQTFGDSSGSYTKNTPPFSSNNVNTQGILQTPGGQLIARSVPSPSSAASFDNASTPPMPYVNSPRSSTNITNTPSPQQQVQQQQQQQQQQRQKVMQLPQHQQQLLVQQQLRQSSSTGVLGQGTISQLHDLPGQTQQKFQQIPGQHQMSYSQPMLQQQFQNRQLQASHMQHNMTQNQINQVNLRSHLNQYSGANSALYNAAQTSPNSQMITNMSASMQSQSLLPRMQFGLTGGHPQRNHPSQILNDQMFGMGASNPASMVAIQQQQQGGFGNIPSNTQNLQPGMVNLPSTTQNPSFPQQRQQNQQWIVHELSHYQKGELTNEPLAMGLVLLLGSFIISFLCIHNGFRWNFG
Length514
PositionHead
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.05
Grand average of hydropathy-0.536
Instability index57.08
Isoelectric point8.91
Molecular weight56668.20
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30531
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.33|      14|      18|     243|     256|       1
---------------------------------------------------------------------------
  243-  256 (28.70/ 9.65)	QVQQQQQQQQQQRQ
  297-  310 (25.63/ 7.82)	QTQQKFQQIPGQHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     186.90|      36|      37|     395|     430|       2
---------------------------------------------------------------------------
  313-  377 (32.06/10.71)	YS..QP..MLQ.QQFqnrQLQ.ASHMQHNMtQN..QI.nqvnlrshlnqysgansalynaaqtspNSQMItNMS
  378-  415 (55.74/24.42)	AS.mQSQSLLPrMQF...GLT.GGHPQRNH.PS..QIL...........................NDQMF.GMG
  416-  451 (53.11/22.90)	AS..NPASMVA.IQQ...QQQ.GGFG..NI.PSntQNL...........................QPGMV.NLP
  452-  490 (45.99/18.78)	STtqNPSFPQQ.RQQ...NQQwIVHELSHY.QK..GEL...........................TNEPL.AMG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      94.23|      24|      31|     182|     208|       4
---------------------------------------------------------------------------
  132-  152 (22.82/ 7.79)	.....VNFGEGLRIPVDQ...RQ......LPAslP
  182-  208 (38.42/23.62)	FSSNNVNTQGILQTPGGQliaRS......VPS..P
  214-  240 (32.99/14.11)	FDNASTPPMPYVNSP......RSstnitnTPS..P
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30531 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) STGVLGQGTISQLHDLPGQTQQKFQQIPGQHQMSYSQPMLQQQFQNRQLQASHMQHNMTQNQINQVNLRSH
2) TFGDSSGSYTKNTPPFSSNNVNTQGILQTPGGQLIARSVPSPSSAASFDNASTPPMPYVNSPRSSTNITNTPSPQQQVQQQQQQQQQQRQKVMQLPQHQQQLLVQQQLRQ
3) VAIQQQQQGGFGNIPSNTQNLQPGMVNLPSTTQNPSFPQQRQQ
279
167
423
349
276
465










Molecular Recognition Features






MoRF SequenceStartStop




NANANA