<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30529

Description Uncharacterized protein
SequenceMASSSSSVDYWRRFFRSANSDIFEVIEQAILVAASDYPQQFRSRRDQIVEKIFTALLPRCFGCDRVELRGAEGEEGHGSVRRVGEKESKVDSSNDGPEFSNRVVSNYSYDEAEALTEEIEEEGQIVGEVIRIKEILANHHEESDNFLFESLRRLQLMELSVDVLKATEIGRAVNGLRKHNSKQIRHLVRALIDGWKVLVDEWVRATAAIADNSPDSVNPSVVDDEDGLPSPPLDEGALFATQTTSIQLSEFFDGMDDDGNFRNNGEFHKRWEHGRRPTENHESLRKQQPMQQPFTREEKVEMKQDPEQRQEPQMRQSKPHEICIGQAKSQNILPKQSNPVISESGPGRPVKIGFEQKVCNEAKFKQPPDTAALRRKPPMIPRDKSKYSEEAPVQAKLEATKRKLHEGYQQAENAKKQRTIQVMELHDIPKQAHNRHPILKSRNHLRNWANGRH
Length453
PositionUnknown
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.06
Grand average of hydropathy-0.899
Instability index60.18
Isoelectric point6.25
Molecular weight51835.35
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30529
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     188.83|      64|     103|     228|     330|       1
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  228-  310 (89.64/113.93)	LP...SPPLDEGAlfatQTTSIQLSeFFDGMDDDGNFrnngefhkrwehgRRPTENhESLRKQQPM....QQPFTREEKVEMKQDPEQRQ
  333-  403 (99.20/47.90)	LPkqsNPVISESG....PGRPVKIG.FEQKVCNEAKF.............KQPPDT.AALRRKPPMiprdKSKYSEEAPVQAKLEATKRK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30529 with Med26 domain of Kingdom Viridiplantae
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