<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30527

Description Uncharacterized protein
SequenceMAGSSGSLDYWRKFFRSANSDIFEVIEHAVLVAASDYPEEFRSRRDRMVEKLFTVLLPRCFGCDRVAEGEEGNASVKRDGEKESKVDSNNVGPEDLNRIVSNYSFDEAEALTEEMEEEGQIVGEVLRIKEIFANHHDESESTLFESLRRLQLMELSVEVLKATEIGKAVNGLRKHNSKQIRHLVRTLIDGWKVLVEEWVRATAAIAVTDNSPDNENPPIEDEEGLPSPPLDEGALFATQTTSIQLSEFFDGMDDDGNFRTNGEFEKQWKNGRMLKVTDEPERKQQPVIPKEKGEARRQELVIKPAKPQEHLVREAKHEIIVNKQSKPVMSGPGRQLKLASDQKAHSEMKTTQHQDNAGVQRKPSVVSLDKTRNSEEALIQAKLEVAKRKLHEGYQLAENTKKQRTIQVMELHDLPKQAHNRHPILKSRNQSRSWASGRH
Length439
PositionUnknown
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.05
Grand average of hydropathy-0.815
Instability index48.20
Isoelectric point5.95
Molecular weight49922.47
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30527
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.81|      30|      33|      99|     131|       1
---------------------------------------------------------------------------
  101-  131 (45.31/30.07)	SNYsFDEAEALTEEMEEEGQIVG...EVLRIKEI
  133-  165 (44.50/20.34)	ANH.HDESESTLFESLRRLQLMElsvEVLKATEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     176.45|      40|      57|     333|     372|       2
---------------------------------------------------------------------------
  271-  294 (35.19/17.63)	GRMLKV..............TDEPE......RKQQPVIPKEKGE
  295-  327 (27.33/12.22)	ARRQELViKPAKPQEHLvREAKHEI..IVNKQSKP.........
  333-  372 (62.33/36.27)	GRQLKLA.SDQKAHSEM.KTTQHQD..NAGVQRKPSVVSLDKTR
  393-  432 (51.60/28.90)	GYQ..LA.ENTKKQRTI.QVMELHDlpKQAHNRHPILKSRNQSR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30527 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DDGNFRTNGEFEKQWKNGRMLKVTDEPERKQQPVIPKEKGEARRQELVIKPAKPQE
2) IAVTDNSPDNENPPIEDEEGLPSPPLDEGALF
3) KLHEGYQLAENTKKQRTIQVMELHDLPKQAHNRHPILKSRNQSRSWASGRH
4) LVREAKHEIIVNKQSKPVMSGPGRQLKLASDQKAHSEMKTTQHQDNAGVQRKPSVVSLDKTRNS
254
205
389
311
309
236
439
374










Molecular Recognition Features






MoRF SequenceStartStop




1) RHPILK
2) SLDYWRKFFR
421
7
426
16