<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30526

Description Uncharacterized protein
SequenceMLGLSVPYILCHKFISLFCLLSKTQCWQEWLIFADIFFFLMKSGCIDFLDFINKIASRVTKGDQQILRSNHVTWLLAQIIRIEIVMSTLSSDPKKVETTKKIISFHKEEKNIDPNNVSPQSILLDFISSSQTLRIWSFNSSIREYLNNDQLQKGKQIDEWWKQVIKVSGDRMMDFTSLDDRSMGMFWVLSFTMAQPACEAVMSWFTSAGVTDISQGSNVQSNDRMMMMRETFPLSMTLLSGLSINLCLKLAFQLEETIFLGQAIPSIAMVETYVRLLLIAPHSLFRPHFTTLTQRSPSILSKNGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKGKRGEHRLFRLAENLCMNLILSIRDFFLVKKEIKGPTDFTETLNRITIISLAITIKTRGVAEVEHTLYLQPLLEQIMATSQHTWSQKTLRYFPPTIREFLMGRMDKRGHTIQAWQQAESTVINQCTQLLSPSADPTYVTTYLSHSFPQHRQYLCAGAWMLMNGQPESINSTNLGRVLRELSPEEVTSNIYTMVDVLLHHIQIELQHGHPAQDLLSKAIANFSFFIWTHELLPLDILLLALIDRDDDPYALRIVINLLDKPELQQRIRVFCTNHSSEHWAHNQPPKRVELQKALGNHLSWKDRYPTFFDDIAARLIPVIPLIVYRLIENDGTDIADRVLSSYTQLLAFHPLRFSFVRDTLAYFYGHLPNKLVLRILKVLDLSKISFSESFPQYMGSSNSVGCPPQEYFANLLLGLVNNVIPSLNSKAKSDSTGDPCSNFGRPAANRSQATSINCSDGQKAFYQNQDPGTYTQLVLETAAIEILSLPASASQVVASLVQIVVHIQPTLIQSGNGLQSMSHGQNSGLPTSPSGGSPESMNTSRSTTSTTWVNANNFVSKSGYSCQQLSCLMIQACGLLLAQLPPEFHMQLYSEASRIIKDCWWLVDSKKSLKELDSAVGYALLDSTWASQDNTSTAIGNIVALLHSFFSNLPHEWLESTHTIIKHLRPLNSVAMLRIAFRIMGPLLPRLAFARPLFMKTLALLFNVMADVFGKNSQPAVHAEASDIRDLIDFLHHAVMYEGQGGPVQNTSKPRVESLTLCGKVMELLRPDVQHLLSHLKTDPNSSIYAATHPKLVVQNPTQTNL
Length1143
PositionTail
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.09
Grand average of hydropathy-0.027
Instability index39.69
Isoelectric point8.27
Molecular weight129076.80
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30526
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.00|      34|      49|     541|     574|       1
---------------------------------------------------------------------------
  541-  574 (60.65/41.37)	HIQIELQHGHPAQDLLSKAIANFSFFIWTHELLP
  593-  626 (62.35/42.75)	RIVINLLDKPELQQRIRVFCTNHSSEHWAHNQPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     446.56|     146|     337|     630|     778|       2
---------------------------------------------------------------------------
  630-  778 (247.47/179.99)	ELQKALGNHL...SW..KDRYPTFFDDIAARLIPVIPLIVYRLIENDGTDIAD.RVLSSYTQL.LAFH...PL..RFSFVR....DTLAYF.......YGHLPNKLV.LRILKVLDLskISFSESFPQYMGSSNSVGCPPQEYFANLLL.GLVNNVI.PSLNSKAKSDSTgDPCS
  952- 1123 (199.08/134.70)	ELDSAVGYALldsTWasQDNTSTAIGNIVALLHSFFSNLPHEWLESTHTIIKHlRPLNSVAMLrIAFRimgPLlpRLAFARplfmKTLALLfnvmadvFGKNSQPAVhAEASDIRDL..IDFLHHAVMYEGQGGPVQNTSKPRVESLTLcGKVMELLrPDVQHLLSHLKT.DPNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     175.02|      61|     337|      21|      88|       3
---------------------------------------------------------------------------
   21-   86 (98.34/92.49)	LSKTQCWQewLIFA..DifFFLMK...SGCIDFLDFINKI.....ASRV.TKGD.............QQILRSNHVTW......LLAQIIRiEIVM
  353-  443 (76.68/48.93)	LAENLCMN..LILSirD..FFLVKkeiKGPTDFTETLNRItiislAITIkTRGVaevehtlylqpllEQIMATSQHTWsqktlrYFPPTIR.EFLM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.80|      23|      50|     168|     190|       4
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  168-  190 (44.44/27.31)	SGDRMMDFTSLDDRSMGMFWVLS
  221-  243 (42.36/25.71)	SNDRMMMMRETFPLSMTLLSGLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     205.55|      68|     337|     450|     523|       5
---------------------------------------------------------------------------
  450-  523 (108.40/88.50)	GHTIQAWQQAEStvINqCT...QLLSPSADP.TYVTTYLSH......SFPQ.HRQYLCAGAWMLMNGQPESINSTNlGrvLRELS
  781-  859 (97.15/60.72)	GRPAANRSQATS..IN.CSdgqKAFYQNQDPgTYTQLVLETaaieilSLPAsASQVVASLVQIVVHIQPTLIQSGN.G..LQSMS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30526 with Med23 domain of Kingdom Viridiplantae
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