<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30525

Description Uncharacterized protein
SequenceMEANHRSSRPLQLHPARVAVVDLFNLYLGRNGRQRSEDRSPEASNKLQKRVTAPHGELPPRDEQFILDFEQLQGQFPDPEQLRTATETVIMSLVVQCSSHAPQSEFLLFAIRSLCSIGYLKWDTFLLSLLSAVSAAEATLAQGTPATPASPLATIHGVSSPAQSATDQSAGATLSPVKPSELSGSGHQSITRSGQMTRGTAMGSLRQFSCKIILAGLEFNLKPITHAEILSQMLNWLVNWDQKPVGSDDSDGKKVWKPERPVHEWMHTCLDVIWRLVDEDKCRIPFYELLRSNLQFMDNIPDDEAMFGIILEIHRRRDMVAMHMQMLDQHLHCPTFATHRFMSQSYPSITGESLANVRYSPITYPSVLGEPLHGEDLATSIPKGSLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYKPQATQASTPGAVFSPEMICEAVVDRTMELLKITNSGNTINLYYFANP
Length466
PositionTail
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.07
Grand average of hydropathy-0.276
Instability index57.92
Isoelectric point6.35
Molecular weight52151.98
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30525
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.90|      15|      15|     340|     354|       1
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  340-  354 (28.56/17.44)	RFMSQSYPSITGESL
  358-  372 (29.34/18.11)	RYSPITYPSVLGEPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.70|      14|      15|     310|     323|       2
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  310-  323 (25.31/16.36)	ILEIHRRRDMVAMH
  326-  339 (27.38/18.27)	MLDQHLHCPTFATH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.83|      12|      16|      97|     108|       3
---------------------------------------------------------------------------
   97-  108 (22.90/13.74)	CS.SHAPQSEFLL
  115-  127 (19.92/11.06)	CSiGYLKWDTFLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.74|      18|      22|     388|     405|       4
---------------------------------------------------------------------------
  388-  405 (33.98/20.00)	WERAL...RCLRHALRTTPSP
  408-  428 (29.76/16.66)	WRRVLlvaPCYKPQATQASTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.46|      21|      22|      46|      67|       5
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   46-   67 (32.03/20.72)	KLQKRVTAPHgELPPRDEQFIL
   71-   91 (36.42/19.17)	QLQGQFPDPE.QLRTATETVIM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.55|      20|      22|     261|     280|       8
---------------------------------------------------------------------------
  261-  280 (38.91/27.84)	PVHEWMHTCLDVIWRLVDED
  285-  304 (35.63/24.90)	PFYELLRSNLQFMDNIPDDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.49|      12|      18|     213|     224|      10
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  213-  224 (20.30/12.52)	ILAGL.....EFNLKPI
  229-  245 (17.19/ 9.60)	ILSQMlnwlvNWDQKPV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30525 with Med23 domain of Kingdom Viridiplantae
Unable to open file!