<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30524

Description Uncharacterized protein
SequenceMSVPELCRNFSAVAWCGNLNAIACASETCARIPSSTTNPPFWIPIHIVNPERPTECAVFNVKADSPRDSVQFIEWSPRSCPRALLVANFHGRITIWTQPSQGPVNLVRDASCWHCGYEWKQDLAVVTKWLSGMNPYRSLPSNSSTLASTKSTFEEKFLSQQSQNSVRWPSFLCVCSVFSSGSIQLHWAQWPPAQNDAEPKWFSTSKGLLGAGPSGIMAADAIITESGTMHVAGVPLVNPSTVVVWEVMPGPGNSFQATAKINTGCAVPPSLNPPSWKGYSPLSAYLFSLQEYFIAEEKQGKRLTDHEINEVASLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVITVVIVEGQYMSPYDPDEGPSITGWRVQCWESSLQPVVLHPIFGNPASSFGGQPPMQTVWLTRVNKSIPPTDDLRNPQTCSAKPMISDELNSSDSSVERANRLSFDPYDLPNDVRQLAQIVYSAHGGEVAVAFLRGGVHIFSGANFNPVDSYHINVGSTIAAPAFSSTSCCLASVRHDTIKDRMILKIIRVLPPAIGSSQSKVNSATWERAIADRFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQHGPNLDRIKCRLLEGTNAQDVRALVLDMQARLLLDMLGKGIESALINPATLLLEPWQASGETLSAIDADKMVVEQALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVGASSGASGARSMVASPTHSSTSATSQGSQSGVPSASGNSQMQAWVQGAIAKISNNADGGSSTAQNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCLIFRRRQSPRFIGNFQKNPDSSLQKAQPVFNGKVDDSSAISRPTIGVAKTEEGQAVRSGQLIVGAKGLEEGSTNKSVRFGSGNAGQGYTSEEVKVLFLILVDLCRRTAALQHPLPASQVGASNIIIRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEDWHRRNMFGGPWSDPDDLGPLDNTLKPKLGGSLSSSITNFVEGHNDYSGAQGLWPRKRRSSERDAAFGLKTSVGLGSYLGIMGSRRDVITAVWKTGLGGVWYKCIRCLRQTCAFAQPGDLNPQNEREAWWISRWAHGCPMCGGAWVRVV
Length1170
PositionTail
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.08
Grand average of hydropathy-0.134
Instability index46.20
Isoelectric point7.11
Molecular weight126399.67
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30524
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     573.89|     181|     232|       3|     229|       1
---------------------------------------------------------------------------
    3-  203 (300.38/238.71)	VPeLCRNFSAVAWC...GNLNAI.ACAS.ETCARIPSStTNPPFWipihivNPERPTECAVFNVKADSPRDSVQfiewSPRSCPRAL.LVANFH....GRITIWTQPSQGPVNLVrdASCWHCG.....YEWKQDLAVVTKWL.SG..MNPYRslPSNSSTLASTKSTFEEKFLsqqsQNSVRWPSFLCVCSVF.SSGSIQLHW.....AQWPPAQNDAEPKWFS
  234-  438 (273.52/143.41)	VP.LVNPSTVVVWEvmpGPGNSFqATAKiNTGCAVPPS.LNPPSW......KGYSPLSAYLFSLQEYFIAEEKQ....GKRLTDHEInEVASLHcspvSNFSAYVSPEAAAQSAA..TTTWGSGvtavaFDPTRGGSVITVVIvEGqyMSPYD..PDEGPSITGWRVQCWESSL....QPVVLHPIFGNPASSFgGQPPMQTVWltrvnKSIPPTDDLRNPQTCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.72|      15|      17|     884|     898|       2
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  884-  898 (26.08/14.41)	AISRPTIGV.AKT.EEG
  900-  916 (16.64/ 6.88)	AVRSGQLIVgAKGlEEG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.09|      17|      17|     701|     717|       3
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  701-  717 (27.76/17.16)	VSSIQAYVDAVLDLASH
  719-  735 (29.33/18.52)	ITRLRRYASFCRTLASH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     242.22|      75|     206|     556|     636|       4
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  556-  636 (117.11/100.63)	SQSKVNSATWERAIadRFWWSLLVGVDWWDAVGCTqSAAEDGIVSLNSV..IAVLDADFHSLPSIQH.RQQHgpNLDRIkCRLL
  765-  842 (125.11/84.11)	SQSGVPSASGNSQM..QAWVQGAIAKISNNADGGS.STAQNPISGPSSFmpISINTGTFPGTPAVRLiGDCH..FLHRL.CQLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.30|      38|     565|     439|     502|       6
---------------------------------------------------------------------------
  464-  502 (63.05/66.26)	PYDLPNDVRQLAQIVYSAHGGEVA...VAFLRGGvHIFSGAN
 1032- 1072 (65.25/25.97)	PWSDPDDLGPLDNTLKPKLGGSLSssiTNFVEGH.NDYSGAQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30524 with Med16 domain of Kingdom Viridiplantae
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