<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30522

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMEENAKRNRVDLDRLPIKRLDAIDEAGNEQFPPDVSHEEKRLGMIRRIDFSNVVAENTDTRKKQKKSPKEAAPAPQQAWPWQSLVENLQLAHQELSIIIDLINTVEANDAVAVAGMQRPKQLPNEILSDLAVSAATKLQRLRNLGRYFKQSSKAMEQKVSKEARFYGSLIRLQQHWKVKRQRLLAAGPGSEGFTFDMLDNPADTTMISRPSPIGVVRVLHETAGLLAIQRPQRSCRFISIRYLGTNFSSKHKGLPTGNIYGSDESPQADKKEALTDEDVNSWVKDTHSALREIHQSIFLEQVFDRVNRESYGPSPGINVTGMREDFLQLAIDQDTSICLCLVSSKNEDDIQMIDSRRHPQNGENGLTRPDSSASANTNEDNNPLKMNKFGVPNPVSLEIYLLHVFHKNFQVKVKERHFATRAPVPGQAPADSCGLSHFCKTVAHRIFSNKVLAEIECLVSRIPYLQLLSHPTWHSRSSSWSLSLKFPDSIFHAGCLSKHPNIYDVKHLTRSQFHTKIVVKDDQVTVSGEGAPGILSSFRGISADVFSVSCYGCDLDDLPLVLLQQIAGQIIHWLHEEALVVGMKVSRDFLCLYFDVDQGDMLGLVAHVDPNDVDGCISWWLIMEDGLTEDGKFSREKGEYENRRFLGHLSLEALYSLLMDLVNLCSSTTGSH
Length672
PositionHead
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.07
Grand average of hydropathy-0.387
Instability index46.62
Isoelectric point6.33
Molecular weight75450.76
Publications
PubMed=22801500

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
core mediator complex	GO:0070847	IBA:GO_Central
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process
production of miRNAs involved in gene silencing by miRNA	GO:0035196	IEA:EnsemblPlants
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30522
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.53|      27|      53|      34|      70|       1
---------------------------------------------------------------------------
   34-   64 (37.52/43.74)	DVSHEEkrLGMIrrIDFSNVVAENTD......TRKKQ
   89-  121 (40.00/19.42)	QLAHQE..LSII..IDLINTVEANDAvavagmQRPKQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.53|      25|     101|     210|     235|       2
---------------------------------------------------------------------------
  210-  235 (41.51/28.33)	PSPiGV.VRVLHETAGLLAIQRPQRSC
  313-  338 (42.03/24.33)	PSP.GInVTGMREDFLQLAIDQDTSIC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.62|      25|      45|     564|     588|       4
---------------------------------------------------------------------------
  564-  588 (44.68/26.89)	QQIAGQIIHWL.HEEALVVGMKVSRD
  611-  636 (43.93/26.33)	NDVDGCISWWLiMEDGLTEDGKFSRE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30522 with Med17 domain of Kingdom Viridiplantae
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