<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30518

Description Uncharacterized protein
SequenceMEAEDLRRLLRSSDVDLWDLIETAVAVAAADRPEELRARRDGIVERLYAPPADRCRDCGPPARSQPRGEEKGSSSPAMKREAAPPPTPPYDRSIDAATRRILAIKESLEHPDQSEDSLISLLQDLADMDITFKSLQETDIGRHVNGLRKHPSNEVRGLVKHLVRKWKDLVEEWVKSNSPGDQSASPAIIADGESPQQIPRKNFQNGLQTPERGNTPHSHNGFSSSEAKVKANPPRREAPPTKPNAHVATALPSAPPPKPKEEKDGLLDPERLASARRRLHENYQEAQNAKKQRTIQVMDIHEIPKQKNTFTRKGGFQGKHW
Length321
PositionUnknown
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.04
Grand average of hydropathy-0.987
Instability index66.11
Isoelectric point8.95
Molecular weight35891.84
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30518
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     113.38|      22|      22|      45|      66|       1
---------------------------------------------------------------------------
   45-   63 (29.50/12.60)	......ERLYAPPADRCRDCGPPAR
   64-   86 (27.04/10.98)	SQPrgeEKGSSSPAMK.REAAPPP.
  213-  236 (27.54/11.31)	GNTphsHNGFSSSEAKVK.ANPPRR
  238-  257 (29.31/12.47)	APP...TKPNAHVATA.LPSAPPP.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.86|      13|      58|     199|     212|       4
---------------------------------------------------------------------------
  199-  212 (20.73/18.32)	PRKNfQNGLQTPER
  259-  271 (24.13/15.21)	PKEE.KDGLLDPER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30518 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) APPADRCRDCGPPARSQPRGEEKGSSSPAMKREAAPPPTPPYDRSIDA
2) FKSLQETDIGRHVNGLRKHPSNEVRGLVKH
3) VEEWVKSNSPGDQSASPAIIADGESPQQIPRKNFQNGLQTPERGNTPHSHNGFSSSEAKVKANPPRREAPPTKPNAHVATALPSAPPPKPKEEKDGLLDPERLASARRRLHENYQEAQNAKKQRTIQVMDIHEIPKQKNTFTRKGGFQGKHW
49
132
170
96
161
321










Molecular Recognition Features






MoRF SequenceStartStop




1) LRRLLR
2) RKWKDLV
3) RRILAIK
6
164
99
11
170
105