<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30517

Description Uncharacterized protein
SequenceMASNPQSSGTQPFRPAVVGPAGPPQNFVPPMPMQFRTLVPPTHQFVPAACQPFRPVAQGMPGPNVAMPTGQTQMPHFPQSQHLPPISGQPGQVLPSSQAIPLPYVQASRPIISGSLPPQQNAQVTSNVPNFPSLGMPLSSSYTFMTSYGQAPNSINAPSQFQPASMMQTPAPLVAQPWSMPGTQSMPLVAPLIQTAQLPAAAAVMAPAQTVQPSSTEQMSSDWQEHTSADGKRYYYNKKTRQSVWEKPLELMTPTERADASTDWKEFTAADGRKYYYNKVTKQSKWTMPDELKLAREQAEKSATQPAPKETGTTVVSVASSVPSVETPSASALALNGPAAVSNAMQLPVDSGTQPPATSVAPSSIAVVTSAGINSSSSVGTENTVGVSNHHAPLTPVITPASASSEFPSLSVDAPTAAINSNQDSSSLTDSASVPDEISAQDLEEAKRTIPVVEKTNFTQLEDKMVDEGQFVYANKLEAKNAFRALLESANVESDWTWEQAMRVIINDKRYGALKTLGERKQAFNEYLGQRKKQEAEERRIKQKKAKEDFTRMLEECKELSSMTRWSKAITMFEDDERFTAVERSREREDLFEGYIAELQKKERAKAAEAHKRNIMEYRAFLESCDFVKANSQWRKVQDRLESDERCSRLEKIVRLENFQEYVRDLEREEEEQRKMQKEQLRRVERKNRDEFRKLMEEHVAAGVLTAKTHWRDYFTQVKDLSPYLAISSNTSGATPKDLFEDVTEELEKQYHEDKAQIKDAMKIGKITLASSWTFEDLKTAVAGIDSLRGISEINLKLVFDELLERVREKEDKDAKKRQRLADNFSDLLYSIKEITAFSNWEQCRSLFEDSQEYRSIGDDNFGREVFDGYVAHLQEKLKEKERKREDEKAKKEKEREEKEKRKEKEKKEKEREREKEKGKDRARKDEIESDIIDVMDSHSSKDKKRDKDKERKHRKHHHTKADDISSDKDQKEESKKSRRHSSDRKKSRKHAYASDSDTENRHKRHKKDRDGSRSNDGYEELEDGELGEDGEIR
Length1034
PositionUnknown
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.06
Grand average of hydropathy-0.951
Instability index52.33
Isoelectric point6.38
Molecular weight117038.47
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30517
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|      93.43|      14|      15|     892|     905|       1
---------------------------------------------------------------------------
  892-  905 (21.05/10.23)	KEKERE.EKEKRKEK
  908-  922 (17.98/ 7.55)	KEKERErEKEKGKDR
  937-  950 (18.06/ 7.61)	DSHSSK.DKKRDKDK
  951-  964 (18.70/ 8.18)	ERKHRK.HHHTKADD
  976-  989 (17.64/ 7.25)	KKSRRH.SSDRKKSR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     178.00|      38|      38|     222|     259|       2
---------------------------------------------------------------------------
  222-  259 (73.69/48.49)	DWQEHTSADGKRYYYNKKTRQSVWEKP....LELMTPTERAD
  263-  300 (68.64/44.63)	DWKEFTAADGRKYYYNKVTKQSKWTMP....DELKLAREQAE
  303-  338 (35.66/19.40)	ATQPAPKETGTTVVSVASSVPSV.ETPsasaLALNGP.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     216.68|      37|      37|      11|      47|       3
---------------------------------------------------------------------------
   11-   43 (63.25/32.68)	........QP........FRPAVVGPAGPPQN.........FVP.P..MP.MQ....FRTLVPPTH
   44-   76 (54.91/27.43)	QFVP.aacQP........FRPVAQGMPGP..N.........VA.....MP.TG.....QTQMP..H
   77-   97 (26.24/ 9.40)	.F.P..qsQH........L.PPISGQPGQ................................VLPSS
   98-  146 (26.36/ 9.47)	QAIPlpyvQA........SRPIISGSLPPQQNaqvtsnvpnF.P.SlgMP.LSssytFMT......
  147-  193 (45.91/21.77)	SYGQ....APnsinapsqFQPASMMQTPAPLV.........AQPwS..MPgTQ....SMPLVAPLI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     373.78|      66|      66|     479|     544|       5
---------------------------------------------------------------------------
  479-  540 (92.47/65.89)	.....AKN..AFRALLE....S.AN.VESDWT.WEQA.........MRVI........INDKRYGALKTLGE..RKQAFNEYL........G..QRKKQE......AEERR
  541-  613 (71.98/49.37)	IKQKkAKE..DFTRMLE....E.CK.ELSSMTrWSKA.........ITMF........EDDERFTAVERSRE..REDLFEGYI........A..ELQKKErakaaeAHKR.
  614-  683 (60.25/39.91)	.......NimEYRAFLE....S.CDfVKANSQ.WRKV.........QDRL........ESDERCSRLEKIV...RLENFQEYVrdlereeeE..QRKMQK......EQLRR
  684-  755 (57.16/37.42)	V.ERkNRD..EFRKLMEehvaA.GV.LTAKTH.WRDY.........FTQVkdlspylaISSNTSGA.....T..PKDLFEDVT........E..ELEKQY......HEDK.
  759-  800 (24.83/11.35)	......KD..AMK..IG....K.IT.LASSWT.FED..........LKTA........VAG..IDSLRGISEinLKLVF................................
  817-  885 (67.10/45.43)	KRQR.LAD..NFSDLLY....SiKE.ITAFSN.WEQCrslfedsqeYRS.........IGDDNFG..........REVFDGYV........AhlQEKLKE......KERKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.21|      24|      36|     351|     377|       6
---------------------------------------------------------------------------
  351-  375 (26.48/24.00)	..SGTQPP...ATSV.APSSiAVVTSAgINS
  377-  401 (21.25/10.73)	SsVGTENTvgvSNHH.APLT.PVITPA....
  402-  421 (26.49/10.17)	S.ASSEFP...SLSVdAPTA.A......INS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30517 with Med35 domain of Kingdom Viridiplantae
Unable to open file!