<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30515

Description Uncharacterized protein
SequenceMQRHSAVSCGNGVSNNAVNGASSRDSARVESSFSAPNFSLNLRRQSQLAPYKIKCDKEPLNCRLGPPDFYPQTPNCPEETLTREYLQTGYKETIEGIEEAREIALCQGSSFSKPEYIVKYKEALRKRLRAINESRALKRKAGQVYGVPLSGPLVTKAGAFPEQRASNEDSRRKWIEALSQQHKRLHSLAEHVPHGYRRKALFEVLIRYNVPLLRATWFIKVTYLNQVRLASSSVSSGTPDKAQFARSDLWSKDVVEYLQQLLDEIFPKDGSNKNESFSSPDAEEPSLHFKWWYMLRLVQWHLAEGLLLPSPIIELVYNQIQEKESPEVLELLFPVLFDVIESIALSQTYIRMFVELFVRRIHDLSSSCSSSVDTSQKSFLVDAMVEIVRYLVIVVPDTFVALDCFPLPSCVVPDLRCRNAFLKLHDSADNVQFDTEDAYLRYLSCGYVTSSIQERASNLSKNVNPILQAHGAAEVLQALDKALMTGDVILAYNSLFEYLSDVAIEERWLEEVSPCLRSSLKWIGTIGSSVICSIFFLCEWATCNYRDFRTSMPHNLKLTGRNDFSQIYFAVLLLKLKMEDLYNFAQSRDGNVMALGTNGKTTSDNDSLLDGTAVENAFVLRNNLSSIYYRKSRRDIFRSPGLLHDVIVCWLDQHEIGKAGSFRGVEIFLLELISNGIFYPPAYVRQLIVSGIMDKNENSLDLQRQRRHRRILQQLPGSCLFDLLEEARIAEVPLLHEIVHAYSSERQLLLRGFLSSKSNHLNSRGDICSIFSLQKDTDHSSSLGDDNHGKVKGQVTEMKALLSCFLHFPHPFSMPIETSADESQGILKSTLDSLESKVDLTEGTSGCEEFRKRKRKKLIDDRSSALQGFSFNHSDDEDNWWAKKGPKFQESLKVELPSKLTKQTSRGRQKIVRKTQSLAQLAATRIDSSLGASTSHVCDNKVSCPHHRSVTEGEVPKDVNHMISGRRSDIGKALKQLRLLERRSISIWLLKSIRQLVGGNERTPSKASNFTDVYSAPVPDDRNTVRWRIGEDELLSILYILDISGDLLSAVKFLIWLLPKVLCGSRTLVQGVRNSMLPKNRDQVCQVGEAFLLSSLQRYENVLRAADVLPEVLTALVHRSLTMMTSNGRPSGAVTFAYARYLLKKYKNVTNVLRWEKKFRATCDQRLLAELETGRSVDDEFMYFSGVPAGITETDEHIRQKINARMSRTGTNMKELVQRHVEGAVHYFYGKERKLSAVATPRNHSLEKWDDSYQIAHDIVLGLVDCIRQNGGATPDGDPCVVASAVSAIVGSIGLAIAKLPDSTASSNYQSFSSSLNSLNCFRHILQIHIFSLCLLKEALGNRLSRVFEIALAAEASSVISTAFAPGKAHRNQFQLSSEIHDIYQDHSNELLNSSTKLIVGRTAKAAAAVSALVIGAIVHGVSSLDRMITAFRLKEGLDVLQFIRSARSSSNGISCSIGTMKLDHCIDVYVHWFRLLVGNCRTVFDGLVAEMLGESYIVALSRLQRVLSLSVVFSPAYSIFAMVIWRPYIFNSNIANHEDFQLYRSFLVAIGDAIRHKPFRDLFFRNTHGFYDILATDSGDSEFAAMLESHNPDKHLKTMAFVPLRARLFLNTLIDCKMPAFSVMREDGTWVAGPAEPRSYSEVEGKLLDQLVHVLDTLQPAKFHWQWVELRLLLNEQALIEKFETHNMSFAEAIRSLSPSADNFVLSESEKKFTEIILSRIIVRPEAAPLYSEVVHLLGKLLQESLVMDTKWILAGPDVLLGRKSIRQQLIFVAQRKGFPIKARFWKPWGWSSSLSDATTNRGDKRKFEAISVEEGEVVEESIDVKMFSKVIHNMDAEGFSPSQQHKTEKALAELILPCIDRSSSELRNLFANELIKQMGAIDQQINTVTPNGFKSSLNSEASSNKGNSRKGIRGGSPVLGRRPIDSVPPSAAALKISLSLRLQFLLRLLPIIYEDRNMRQMLAPIILRLLGKRLVYEDADVCPSTIHMDPLKRELDSPIEASLLDHSSDSLFDRLLAILHGLLSSYKASWLKSKSVTKSAIKARDISAFDREAAENLQNDLDRMELPASIRWRIQTAMPFLSPSLSFMAPCHLPVLPSVAHTLLQPSNLNPGTHQRSIPAWTYNFPGKSKSSALQDMDMEIDPWTLLEDGTNSASASNNSSNMGSTNGDHSNLKACCWLKGTVRVRRTDLTYIGPLDEDS
Length2202
PositionKinase
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.08
Grand average of hydropathy-0.213
Instability index48.40
Isoelectric point8.39
Molecular weight247295.98
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30515
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     324.81|     124|    1277|     668|     819|       1
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  440-  537 (106.65/59.22)	LRYLSCG......YVTSSIQERAsnLSKNVNPI.LQ.AHGAAEVLQALDKAlmtgdvilaynSLFEYLSDVAIEE.RWLEEV............SPCLRSSLKWIGTIGSsvICSIFFL..............................................
  670-  819 (180.98/172.51)	LELISNGifyppaYVRQLIVSGI..MDKNENSLdLQrQRRHRRILQQLPGS...........CLFDLLEEARIAEvPLLHEIvhaysserqlllRGFLSSKSNHLNSRGD..ICSIFSLQKDTDHSsslgdDNHGKVKGQVTEMKALLSCFLHFPHPFSMPIETS
 2059- 2100 (37.17/10.49)	......................................................................................................................LQNDLDRM.....ELPASIRWRIQTAMPFLSPSLSFMAPCHLPVLPS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     175.95|      78|     614|    1193|    1427|       2
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    5-   64 (93.10/ 9.55)	SAVSCGNGVSNNAVNGASSRDSARVESSFSAPNFSLN.LRRQSQLAPYKIKCDKEPLNCRL...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1193- 1210 ( 1.89/14.12)	.............................................................gppdfypqtpncpeetltreylqtgyketiegieeareialcqgssfskpeyivkykealrkrlrainesralkrkagqvygvplsgplvtkagafpeqrasnedsrrkwiealsqqhkrlhslaehvphgyrrkalfevlirynvpllratwfikvtylnqvrlasssvssgtpdkaqfarsdlwskdvveylqqlldeifpkdgsnknesfsspdaeepslhfkwwymlrlvqwhlaeglllpspiielvynqiqekespevlellfpvlfdviesialsqtyirmfvelfvrrihdlssscsssvdtsqksflvdamveivrylvivvpdtfvaldcfplpscvvpdlrcrnaflklhdsadnvqfdtedaylrylscgyvtssiqerasnlsknvnpilqahgaaevlqaldkalmtgdvilaynslfeylsdvaieerwleevspclrsslkwigtigssvicsifflcewatcnyrdfrtsmphnlkltgrndfsqiyfavlllklkmedlynfaqsrdgnvmalgtngkttsdndslldgtavenafvlrnnlssiyyrksrrdifrspgllhdvivcwldqheigkagsfrgveifllelisngifyppayvrqlivsgimdknensldlqrqrrhrrilqqlpgsclfdlleeariaevpllheivhaysserqlllrgflssksnhlnsrgdicsifslqkdtdhssslgddnhgkvkgqvtemkallscflhfphpfsmpietsadesqgilkstldsleskvdltegtsgceefrkrkrkkliddrssalqgfsfnhsddednwwakkgpkfqeslkvelpskltkqtsrgrqkivrktqslaqlaatridsslgastshvcdnkvscphhrsvtegevpkdvnhmisgrrsdigkalkqlrllerrsisiwllksirqlvggnertpskasnftdvysapvpddrntvrwrigedellsilyildisgdllsavkfliwllpkvlcgsrtlvqgvrnsmlpknrdqvcqvgeafllsslqryenvlraadvlpevltalvhrsltmmtsngrpsgavtfayaryllkkyknvtnvlrwekkfratcdqrllaeletgrsvddefmyfsgvpagitETDEHIRQKI.NARMSRTG
 1284- 1344 (83.64/199.75)	SAVSAIVGSIGLAIAKLPDSTASSNYQSFSSSLNSLNcFRHILQIHIFSLCLLKEALGNRL...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1435- 1453 (-2.68/ 0.00)	...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................srvfeialaaeassvistafapgkahrnqfqlsseihdiyqdhsnellnsstklivgrtakaaaavsalvigaivhgvssldrmitafrlKEGLDVLQFIrSARSSSNG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     304.64|     101|    1038|     886|     992|       3
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  886-  992 (148.44/135.98)	PKFQESLKVELPSKLtkQTSRGRQKIVRKTQSLAQLAATRIDSSLGASTSHvCDNKVsCPH..HRSVTEGEVPKDVNHMISGRRSD..IGKALKQLR.LLERRSISiWLlKS
 1930- 2035 (156.20/116.41)	PPSAAALKISLSLRL..QFLLRLLPIIYEDRNMRQMLAPIILRLLGKRLVY.EDADV.CPStiHMDPLKRELDSPIEASLLDHSSDslFDRLLAILHgLLSSYKAS.WL.KS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.55|      39|    1038|     569|     610|       4
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  569-  610 (60.63/49.23)	FAVLLLKLKMEdlyNFAQSR.DGNVMALGTNGKTTSD.NDSLLD
 1610- 1650 (62.92/42.02)	FLNTLIDCKMP...AFSVMReDGTWVAGPAEPRSYSEvEGKLLD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.15|      12|     613|     276|     292|       5
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  276-  292 (19.89/20.29)	SFSSPDAEEpslhfKWW
  870-  881 (27.26/13.30)	SFNHSDDED.....NWW
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     204.48|      79|     613|    1033|    1118|       7
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 1033- 1071 (44.08/23.96)	.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ELLSI...LY..ILDISGDLLSAVKF.L..IWLL..PKVLCGSRTLVQG
 1072- 1111 (46.88/37.88)	VRNSMLPKNRDQVCQVGEAFLLS.SLQRY.ENVLRAADVLPE............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1651- 1683 (27.45/10.60)	..........................................vltalvhrsltmmtsngrpsgavtfayaryllkkyknvtnvlrwekkfratcdqrllaeletgrsvddefmyfsgvpagitetdehirqkinarmsrtgtnmkelvqrhvegavhyfygkerklsavatprnhslekwddsyqiahdivlglvdcirqnggatpdgdpcvvasavsaivgsiglaiaklpdstassnyqsfssslnslncfrhilqihifslcllkealgnrlsrvfeialaaeassvistafapgkahrnqfqlsseihdiyqdhsnellnsstklivgrtakaaaavsalvigaivhgvssldrmitafrlkegldvlqfirsarsssngiscsigtmkldhcidvyvhwfrllvgncrtvfdglvaemlgesyivalsrlqrvlslsvvfspaysifamviwrpyifnsnianhedfqlyrsflvaigdairhkpfrdlffrnthgfydilatdsgdsefaamleshnpdkhlktmafvplrarlflntlidckmpafsvmredgtwvagpaeprsysevegklldQLVHV...L.........DTLQPAKFhW..QWVE..LRLLLNEQALIEK
 1686- 1769 (86.06/59.90)	THNMSFAEAIRSLSPSADNFVLSeSEKKFtEIILSRIIVRPE................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aapLYseVVHLLGKLLQESLV.MdtKWILagPDVLLGRKSIRQ.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.01|      29|    1038|     836|     864|       8
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  836-  864 (51.02/35.82)	SKV..DL.TEGTSGCEEFRKRKR.KKLI...DDRSS
 1830- 1865 (31.98/19.35)	SKVihNMdAEGFSPSQQHKTEKAlAELIlpcIDRSS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30515 with Med12 domain of Kingdom Viridiplantae
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