<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30513

Description Uncharacterized protein
SequenceMGDGRGGGGGGNRPAWLQQYELVGKIGEGTYGLVFLARTSLRKGCIAIKKFKQSKEGDGVSPTAIREIMLLRETCHENVVKLVNVHINHADMSLYLAFDYAEHDLYEIIRHHREKLNHGINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGDGEEHGVVKIADFGLARIYQAPLKPLYENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGVEVKGTSNPFQLDQLDKIFKVLGHPTPERWPTLVNLPHWQNDQQHIQGHKYENHGLHNFVSVPQKSPAFDLLSRMLEYDPRKRITAAQALEHEYFRMDPLPGRNALVPSQPGEKIVNYPARPVDTTADFEGTVAVQPSQPVSSGNAASGNVAGASVAPPRSMPRPMHVVGMQRMPNTGMPAFNVATQTGVGAPTSGNIPMQRGAAAQAHQQQLRRKDPGLGMQNPGYPQQKRRF
Length466
PositionKinase
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.08
Grand average of hydropathy-0.387
Instability index37.93
Isoelectric point9.26
Molecular weight51816.72
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IBA:GO_Central
RNA polymerase II CTD heptapeptide repeat kinase activity	GO:0008353	IBA:GO_Central

GO - Biological Process
protein phosphorylation	GO:0006468	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30513
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     106.97|      34|      42|     155|     191|       1
---------------------------------------------------------------------------
  155-  191 (50.78/41.80)	LVMGDGEEHGVVKIADFGLarIYQA..PLKPLYEnGVVV
  200-  235 (56.19/35.04)	LLLGAKHYTSAVDMWAVGC..IFAEllTLKPLFQ.GVEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.93|      16|      16|     351|     366|       2
---------------------------------------------------------------------------
  351-  366 (28.95/16.49)	PARPVDTTADFEGTVA
  369-  384 (27.98/15.72)	PSQPVSSGNAASGNVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.72|      13|      16|     435|     447|       3
---------------------------------------------------------------------------
  435-  447 (22.57/13.48)	GAAAQAHQQQLRR
  453-  465 (26.15/16.81)	GMQNPGYPQQKRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.29|      11|      16|     385|     395|       4
---------------------------------------------------------------------------
  385-  395 (22.21/12.92)	GASVAPPRSMP
  402-  412 (23.07/13.70)	GMQRMPNTGMP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     113.38|      35|     167|     102|     138|       5
---------------------------------------------------------------------------
  102-  138 (61.04/46.61)	EHDLYEIIRHHREklNHGINQY.TV..KSLLWQLLN.GLNY
  272-  310 (52.34/33.72)	QNDQQHIQGHKYE..NHGLHNFvSVpqKSPAFDLLSrMLEY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30513 with CDK8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TADFEGTVAVQPSQPVSSGNAASGNVAGASVAPPRSMPRPMHVVGMQRMPNTGMPAFNVATQTGVGAPTSGNIPMQRGAAAQAHQQQLRRKDPGLGMQNPGYPQQKRRF
358
466










Molecular Recognition Features






MoRF SequenceStartStop




1) QLRRKDPGLGMQNPGYPQQKRRF
444
466