<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30512

Description Uncharacterized protein
SequenceMCNNQIVEKEEGKDFSIGEMEEGNRLVHDSLSTVALAIDGTKKSKYVIQWALNKFRDEGRVMFKLLHVRPRIKMIPTPMGNLPVNQVREDVASAYRKEQGWRTQTMLRPYKDMCLQNQVQLIETKVVVLEADDVAEAIAKEVTENSISKLVIGASSRNALMRKFKGSNLPTRIAECKPSFCTVYVVSKGKLSSICASVSEMDETASTSITDDSAKEENDSSGLSSSFSSNSRNPISGSGAEVKSSFRLTCLPQLQQEAFISKDYGRSNSVDTLLTGNMSLLEDSRISSSYVSESQYSNSIASLRSYQTVKSWNFTTSSTSHSSKEYSPSGNEFVYSQSSTMQGDIDLELEKLRTQLRHPMGLFKFAPNELHSASQQLHDIHEHDSEEIFKLHETRSRLEMTSKIAQLENERHEDSEKQTPERELACSSEPYMKYNWEEIVDATLSFSDALKIGVGANGTVYKGIFHHTVAAVKVLHSSEGSNTRQFNQELEVLSRVCHPHVLLLLGACPDKGCIVYEYMENGSLEDRLQCKNDTLPLPWFHRFRIAWEVASALIFLHNSRPEPIIHRDLKPANILLDTNFVSKIGDAGLSTLIPTSNVPLSTMYKDTAPVGTFFYMDPEYQRTGLVSAKSDTYALGMVILELLTAKSPMGLAFAIETALETDCLMDILDSKAGRWPEAGAKELANLGLRCLEMRRKDRPELKDQVLPVLERLKDTMAQAHVSLRDPSVPPKHFICPIQKTVMDDPCIAADGYTYDRYAIGAWLSWNENSPMTNLPLPNKELIPDNSLLSAIIDWKARTQ
Length799
PositionTail
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.07
Grand average of hydropathy-0.384
Instability index39.75
Isoelectric point5.71
Molecular weight89463.52
Publications
PubMed=22801500

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30512
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     240.22|      66|      66|     220|     285|       1
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  156-  217 (38.58/17.44)	...........SRNALmrKFKGsnlptriAECKP.SF...CTVYV.....VS.KGKLSSicASVsemDE..TASTSI.TDDSakeE
  220-  285 (113.54/64.44)	SSGLSSSFSSNSRNPI..SGSG.......AEVKS.SFRLTCLPQLQQEAFIS.KDYGRS..NSV...DTLLTGNMSL.LEDS...R
  288-  353 (88.10/48.49)	SSYVSESQYSNSIASL..R.SY.......QTVKSwNFTTSSTSHSSKEYSPSgNEFVYS..QS.....STMQGDIDLeLEKL...R
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.13|      23|     310|     397|     433|       2
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  368-  390 (40.50/33.76)	NELHSASQQLHDIHE..HDSEEIFK
  409-  433 (37.63/20.46)	NERHEDSEKQTPERElaCSSEPYMK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     235.70|      77|     170|     506|     609|       4
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  526-  609 (115.84/116.50)	DRLQCKNDTLPLpwFHRFRIAweVASALIFLHN.SRPE.....PIIHRDLKPANILLDTNFVSK..IGdAGLS..TLIPTSNVPLSTmyKDTAP
  697-  783 (119.86/61.56)	DRPELKDQVLPV..LERLKDT..MAQAHVSLRDpSVPPkhficPIQKTVMDDPCIAADGYTYDRyaIG.AWLSwnENSPMTNLPLPN..KELIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.66|      30|      48|      63|      92|       5
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   63-   92 (51.92/39.52)	FKLLHVRPRIKMIPTPMGNLPVNQVREDVA
  110-  139 (47.74/35.74)	YKDMCLQNQVQLIETKVVVLEADDVAEAIA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30512 with Med32 domain of Kingdom Viridiplantae
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