<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30511

Description Uncharacterized protein
SequenceMEGNSWRPAQGEPAAASDGGSVDWRTQLQPEARHRIVNKIMETLKRHLPISVPEGLNELQKIAIRFEEKIYTAAANQSDYLRKISLKMLSMESKSQHSASINPSMSNSTITNQNPVDSALLGVQSQIMVNQPSTRQQLLPQNIQNNNSVTAQSSANIPSALSSIAVPDIYTNAQRQMQGRQQQQQIISQQQHQSQNQFLYQHQLQQQIFNQKLQHSPLLQPHVQQPQQPMLKTTQLQSSQQPLMQMTSNLQSGQSTIQQMQPGAIQSAVQPGLQQNQLNSVQQSVPSVLQQRPQSVARQQQQQQPTILQQAASLQQQQQQQQPTSAPQQSNLPVQQHQQQLMAQQANISNVQQTQLLGQQASVTEMQQQPQRIPVQQNNLLSMQQPQHLLNQQNISLHQQQQFGTQSNVSVLQQSQQQQQQQQLLGSLSNVSNMQPHQRSMHMLQQPKTSVQQQQQNQQSSLAMLQPQGQQPQHQSSQHQLISQFQSQPASLQHQLGQHPGSLQREMQQRIQVSGALLSQNAIEQQKQFGQPQVGLPEVSSSTSLDSTAQTGHGGVVDWQEEIYQKIKSMKELYFAELSELYQRIVLKLQQQDALMPSVKTSEQFDKIKSFKLILERTLQFLQLSKNNIQSGLKDKLPIYEKQIVNLLASNKKKVIPSQQPGQQQFQHPGVPSQSMPQQQPSQVPQLQQNDNYTNQQMNLQGSMTSMQTAAVPSMQQGSVPLSTHFGVPTPQQNITNALQTGSTIDTVQGSSFSSLQQGAIASIQQGGLVSGQTATARATTTATASNAKSTNEAAQQLQQQQQQQKQQHTPQIPIHQIPQLHQTNEVNELKLRQGAGIKPGLYPQNYSAGQRHNYYQQLKNAAAFPNSSPQNFQASSPQISHHSSQLDQHTLLSSQIKSGTPLQSANSPFVASPSTPIASSPIPGESEKHSGITSLPNHTRHQQTAIAPPQAQSINVATPGISASPLLAEFTSPDGNQSSLPNSVVGKSNKAERPLERLIEVIRSSTPKALRSAVSDIGSVVSMIDRIAGSAPGNGSRVAVGEDLVAMTKCRLQAKSFMSQDGSATTKKMKRDTSAMPLNNVSSAGSFNDSFKQSYGLDNSELESTATSRVKRQKVEVNHALVEEIREINLRLVDTVVSISEEETDSSSAALEGEGTVVKCSFTAVALCESLKSQFASEHMSPILPLRLLVPVSYPKCSPVLLDKLPDDQRESDDLSVKAKSRFIISLRALSQPMSLGEMARTWDACVRKVITEFAQQTGGGTFSSRYGAWENCISA
Length1277
PositionTail
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.04
Grand average of hydropathy-0.668
Instability index69.15
Isoelectric point9.25
Molecular weight140626.72
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30511
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.70|      15|      15|     291|     305|       1
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  291-  305 (29.35/ 9.04)	QRPQSVARQQQQQQP
  309-  323 (29.35/ 9.03)	QQAASLQQQQQQQQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     132.55|      22|      23|     392|     413|       2
---------------------------------------------------------------------------
  392-  413 (39.46/12.25)	QQNISLHQQ.QQFGTQSNVSVLQ
  414-  435 (31.80/ 8.06)	QSQQQQQQQ.QLLGSLSNVSNMQ
  446-  466 (32.07/ 8.21)	QPKTSVQQQ.QQ.NQQSSLAMLQ
  657-  678 (29.22/ 6.64)	PSQQPGQQQfQHPGV.PSQSMPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     630.79|     109|     109|     818|     926|       3
---------------------------------------------------------------------------
  201-  276 (65.81/19.37)	............QHQL.....QQQIFN.............Q..KlqHSP.LLQPHVQ.......QPQQP.MLKTTQLQSS...qQP..L..mQM..............TSN..L.........QS........................GQSTI........................qqmQPGA..IqsavqPGLQQ..N................................
  324-  385 (46.20/10.92)	.......................................................TS.......APQQS.NLPVQQHQQQ....LM..A...QQA............NISN..VqqtqllgqqAS.....................VTEMQQ.............................QPQR..I.....P.VQQ..N........NLLS...MQ.Q.............
  469-  572 (100.27/34.21)	GQQPQHQSS...QHQL.....ISQ......F.Q.SQPASLQ.......H.QLGQHPG.......SLQRE.MQQRIQV.SG....AL..L..sQNAieqqkqfgqpqvGLPE..V.........SS.....................STSLDSTA...........................QTG.................hggvvdwqEEIYQ.KIK...........SMKE
  573-  713 (77.21/24.28)	.LYFAELSElYQRIVL.....KLQ.QQDALMPSvKTSEQFDkiK..SFK.LILERTL.......QFLQ...LSKNNIQSGlkdkLP..IyekQIV............N..L..L.........AS....................NK.......kkvipsqqpgqqqfqhpgvpsqsmpqqQPSQ..V.....PQLQQ..N........DNYTNQQMNlQGsmtsmqtAAV.P
  714-  840 (101.59/34.78)	SM..QQGSV.PLSTHFgvptpQQNITNALQ.TG.STIDTVQ..G..SS......FSSlqqgaiaSIQQG.GLVSGQTATA....RA..T...TTA............TASN..A.........KStneaaqqlqqqqqqqkqqhtPQIPI...................................hqI.....PQLHQ..T........NEVNELKLR.QG.......AGIKP
  841-  949 (172.78/65.45)	GLYPQNYSA.GQRHNY.....YQQLKNAAAFPN.SSPQNFQ..A..SSP.QISHHSS.......QLDQH.TLLSSQIKSG....TP..L...QSA............NSPF..V.........AS....................PSTPIASSP...........................IPGE........SEKHSgiT........SLPNHTRHQ.QT.......A.IAP
  950- 1035 (66.95/19.86)	...PQAQSI.NVATPG.....ISASPLLAEF...TSPDGNQ..S..SLPnSVVGKSN.......KAERPlERLIEVIRSS....TPkaL...RSA............VSDIgsV.........VS....................MIDRIAGSA............................PGN................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.48|      17|     618|     172|     192|       4
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  172-  192 (24.61/14.74)	NAQRQMQgRQQQQQiisQQQH
  793-  809 (31.87/ 9.51)	EAAQQLQ.QQQQQQ...KQQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.48|      10|      15|     112|     121|       5
---------------------------------------------------------------------------
  112-  121 (17.85/ 8.65)	NQNPVDSALL
  130-  139 (16.63/ 7.41)	NQPSTRQQLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30511 with Med15 domain of Kingdom Viridiplantae
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