<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30510

Description Uncharacterized protein
SequenceMKYYLSILCGQIKSMKELYFAELSELYQKIAMKFQQHEVLMPFAKTSELFEKRKRFKIMLEHILQVLQFSKSNIDPDLKDKIPLYEKQIINILALNKINVAPSRSPGQQQFQHPGGHSQFMPHQSQVPGQHDNRTKQQINLQGSTTSMQPAAVPGLQHGSILLSDAGVTTAQQKITSALQTDSMVETVQGSSFRSLQQGAIASTQQGGLISGQSFVNVPQQTTANAMSDGLIEQYHANTKQPSSSATQQQQHFKQQEQQQKQHHLNHNHQLEQQLRQHQLPQLFQKQRLLQQQQLQHQQQQKNQPQAPQTPVHQVPQLNQTNEVNELKLGQGPDIKPGLYPHHYSTSQHPSYYQQIKSGASFPFSFPQDFQASSPHISCHSPQSDQQSLLPSQIKSGTPLQSAESPFIPSPSTSITLSPVPANEKQLSGVMSLPNAGNIEHQQAAVAPSEAQSFTVTTPGITASPLLAEFTSPDGNQNDIPNLVVGKASTTEKPLERLIEVIRSSTPTTLSSAVNDIRSVVSMTDRIPGSETENGSRAAVGENLITKKRNRDTSAMPLNNLSSAGSVNDRDKQTYTVDTSELQLTVTSRVKRPKVEMNHALHEEIREINQRLIGTEIKISDVDTDPISAASNGKGTIVKFFFTPLIRSPISKSSYTMSRIQPLNLLVPASYPKCSPVLLDELPDDQSRESEDLSIKARSRFNNSLRGLSQLVSLGELARTWDACAHKVLVEYAQQTGGGTFSSTYGTWEKCVGV
Length754
PositionTail
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.05
Grand average of hydropathy-0.592
Instability index64.17
Isoelectric point8.53
Molecular weight83425.77
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30510
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.37|      16|      20|     382|     399|       1
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  367-  382 (25.15/12.12)	PQDFQASSP.HISCHSP
  383-  399 (23.22/11.03)	QSDQQSLLPsQIKSGTP
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      95.91|      20|      20|     179|     198|       2
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  145-  158 (17.70/ 6.74)	..TTSM....QPAAVPGLQH
  162-  173 (17.50/ 6.58)	LLSDAGVTTA........QQ
  179-  198 (34.60/20.32)	LQTDSMVETVQGSSFRSLQQ
  204-  220 (26.11/13.50)	TQQGGLIS...GQSFVNVPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.45|      14|      20|     331|     344|       3
---------------------------------------------------------------------------
  331-  344 (29.79/15.91)	QGP....DIKPGL.YPHHY
  348-  366 (17.66/ 6.33)	QHPsyyqQIKSGAsFPFSF
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     162.26|      37|      41|     233|     273|       4
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  102-  128 (42.58/12.29)	.........PSRSPGQ...QQ..FQHPGGHSQ..FMPHQ..SQVP.
  233-  273 (61.24/27.75)	EQYhantKQPSSSATQ...QQQHFKQQEQQQKQHHLNHN..HQLEQ
  276-  317 (58.45/20.36)	RQH....QLPQLFQKQrllQQQQLQHQQQQKNQPQAPQTpvHQVPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     200.75|      44|      45|     415|     459|       5
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  404-  451 (65.96/47.32)	ESPFIPSPstsITLSP..............VPANEKQLSGVMSLPNaGN........IEHQQAAVAPSEA
  452-  497 (44.40/26.23)	QSFTVTTP..gITASP..............LLAE.......FTSPD.GNqndipnlvVGKASTTEKPLER
  500-  543 (34.94/18.96)	EVIRSSTP...TTLSSavndirsvvsmtdrIPGSETE.NG....................SRAAV..GEN
  544-  582 (55.45/34.71)	LITKKRNR...DT.SA..............MPLNN..LSSAGSV...ND........RDKQTYTVDTSEL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.22|      10|      21|      20|      29|       6
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   20-   29 (18.22/14.46)	FAELSELYQK
   43-   52 (18.00/14.20)	FAKTSELFEK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.00|      34|      48|     647|     681|       7
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  647-  681 (53.87/41.02)	RSPISKSSYTMSRIQPLNLLVpASYPKCSPVLLDE
  698-  731 (57.13/38.02)	RSRFNNSLRGLSQLVSLGELA.RTWDACAHKVLVE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30510 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GLISGQSFVNVPQQTTANAMSDGLIEQYHANTKQPSSSATQQQQHFKQQEQQQKQHHLNHNHQLEQQLRQHQLPQL
2) KQRLLQQQQLQHQQQQKNQPQAPQTPVHQVPQLNQTNEVNELKLGQGPDIKPGLYPHHYSTSQHPSYY
3) QASSPHISCHSPQSDQQSLLPSQIKSGTPLQSAESPFIPSPSTSITLSPVPANEKQLSGVMSLPNAGNIEHQQAAVAPSEAQSFTVTT
4) SAVNDIRSVVSMTDRIPGSETENGSRAAVGENLITKKRNRDTSAMPLNNLSSAGSVNDRDKQTYTVDTSELQ
5) SRSPGQQQFQHPGGHSQFMPHQSQVPGQHDNRTKQQINLQGSTTSMQPAAVPGL
208
286
371
512
103
283
353
458
583
156










Molecular Recognition Features






MoRF SequenceStartStop




NANANA