<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30509

Description Uncharacterized protein
SequenceMASSSGSIDYWRKFFRSANSDIFGVIEQAVAVAASDYPQEFKSRRDQIVEKFFTALLPRCLGCDRVEPRGAEGDGSGRKDGEKERGSKVDSSNDGPEELNRAVSNNSYDEAEALTEEVQEESQTVGEVLRIKEILEHNHDESDSLLYELLRRLQSMQLSVEVLKATEIGKAVNGLRKHNLKQIRHLVRALIDGWKVLVDEWVNATAAIADSSPDSLNPCMVDEEGGIPCPSLDEGVFLAAQTTSIQNSKFFDGMDEDGNYTNNGHEQLRKLQPRLQPVVPEEKGEMRRQELRKPLVLEEKKQMRRQEQQSASQVAKGNMGREEPIMRRTKPQELCVVQEKPQVMINRQNNRVIPDSGPGRSSTLSSEQKNGNETNHSKQQEVAALQRKPRIILQDKSKYSEEASVRAKLEVSKRKLHEGYQQADNAKRQRTIQVMELQDIPRQAHNSGQSVMKSRNLIRSSANSRHQFS
Length469
PositionUnknown
OrganismMusa acuminata subsp. malaccensis (Wild banana) (Musa malaccensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Zingiberales> Musaceae> Musa.
Aromaticity0.04
Grand average of hydropathy-0.877
Instability index56.93
Isoelectric point6.56
Molecular weight52987.69
Publications
PubMed=22801500

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30509
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.48|      30|      32|     105|     134|       1
---------------------------------------------------------------------------
  105-  134 (47.98/28.64)	NNSYDEAEALTEEVQEESQTVG...EVLRIKEI
  136-  168 (44.50/26.12)	EHNHDESDSLLYELLRRLQSMQlsvEVLKATEI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.02|      30|      37|     286|     321|       2
---------------------------------------------------------------------------
  286-  321 (43.64/37.96)	MRRQelrKP...LVLEEKKQ..MRRQEQQSasqVAKGNMGR
  326-  360 (47.38/26.32)	MRRT...KPqelCVVQEKPQvmINRQNNRV...IPDSGPGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.98|      14|      15|      69|      82|       3
---------------------------------------------------------------------------
   69-   82 (25.13/15.70)	RGAEGDGSGRKDGE
   85-   98 (24.85/15.44)	RGSKVDSSNDGPEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.07|      18|     112|     255|     274|       4
---------------------------------------------------------------------------
  255-  272 (31.63/15.82)	DEDGNYTNNGHEQ.LRKLQ
  368-  386 (25.44/10.42)	QKNGNETNHSKQQeVAALQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      61.05|      14|      15|     434|     447|       5
---------------------------------------------------------------------------
  415-  426 (14.88/ 6.73)	..KLHEGYQQADNA
  434-  447 (24.83/16.16)	VMELQDIPRQAHNS
  451-  464 (21.33/12.84)	VMKSRNLIRSSANS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30509 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EASVRAKLEVSKRKLHEGYQQADNAKRQRTIQVMELQDIPRQAHNSGQSVMKSRNLIRSSANSRHQFS
2) EPRGAEGDGSGRKDGEKERGSKVDSSNDGPEELNRAVSNN
3) SKFFDGMDEDGNYTNNGHEQLRKLQPRLQPVVPEEKGEMRRQELRKPLVLEEKKQMRRQEQQSASQVAKGNMGREEPIMRRTKPQELCVVQEKP
4) VMINRQNNRVIPDSGPGRSSTLSSEQKNGNETNHSKQQEVAALQRKPRIILQDKSKY
402
67
248
343
469
106
341
399










Molecular Recognition Features






MoRF SequenceStartStop




1) SGSIDYWRKFFR
5
16