<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30483

Description Med20 domain-containing protein
SequenceMGVTCIARWPLALPNSMPQIVASRPMEIRSALVSIQCTSRKASVFDSHHVKLTAIDRFLYTLAYGENTHILLEDRKSLERPAALEKIRLEQEAANQAAAAAVTPAPAMEDDDVVIIDATGQEPGSVLPKVKKIPLPLHFRTTFISLRPPSTFEQFLGQVKAKWVPRPSHASIEGVTFTIGTDWIIRMGFIQAGTAQKGVMLEVSTEYLPMQTFPPTTDGQPPAILAEFVASIVPQSHADYAFLPVRFSEQQWSEVLGSADDVQSEALGAAEGVYSHGFEYATPRPSDWGTGFVQERRSAFLLLRMMLDEKLLA
Length313
PositionHead
OrganismThanatephorus cucumeris (strain AG1-IA) (Rice sheath blight fungus) (Rhizoctonia solani)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Cantharellales> Ceratobasidiaceae> Rhizoctonia> Rhizoctonia solani AG-1.
Aromaticity0.08
Grand average of hydropathy-0.044
Instability index47.92
Isoelectric point5.56
Molecular weight34462.13
Publications
PubMed=23361014

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30483
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     222.22|      67|     102|     120|     191|       1
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   77-  117 (48.40/24.17)	.........................SLERPAALEKI..RLEQEAANQAAAAAVTPAPAMEDDDVVI....ID
  120-  191 (107.14/75.39)	GQEPGsVLPKVKKIPLPLHFRTTFISLRPPSTFEQFLGQVKAKWVPRPSHASIEGVTFTIGTDWIIrmgfIQ
  194-  238 (66.67/35.16)	TAQKG.VMLEVSTEYLPMQTFPPTTDGQPPAILAEFVASI....VPQ.SHA.....................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30483 with Med20 domain of Kingdom Fungi
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