<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30465

Description Legumelike lectin family protein
SequenceMEPRPEGAVQQGTQAPPPQVPVEAVTDRVTQLQDKIDGLGEKFYTFIGVLQQDAPPLPFDEFKHLNRTADGPKTVANGANAAVADGGPVLPVLPSMPMPEPAAPVPTGPTMEVMEGEAANMAALLLNNVKEVDMLIDSLPGINSTKPEQLKRLQELEKQNQHTAQSLRETLSWAEETLVLVQQALAEIYADRLQSMNEQAQLDRGGTLPFWEFGGSAIVSEDRIRLTPALQSRVGWVWNSVAADMDAWEVQMDFEIGGGGSRGADGMALWYVAEPKKEGISMGSAEEYRGMAVYFDTFDNDGQRYDPFDDGRRGEKASCSNLNRETRSKMRVIYRDGVIQVETDDGAGHWVPCITHHESLPKGYYFGLSAATGHLTDNHDVFSFITYNLDPWRRRPPVPPRQQEIEPEPEHVETVQSTEPVKPNPYLPKDPPNPYLPQQQQQQHEQQQQQQQQQPRSQEDTNKLTSKLDQLTFKVEAVNDMRQPADNNDLTQEIKGALREVRVLQDSVNEFRRVVMEELSAVNKLVGDLKGHVSAEQGNTYNNVARLIRELQQHVTSVQTLVENNALQELKSGKEELKSVVEKSGSVAWWIYFCFFQVCFGVAFIMWKKAKDDANKKFL
Length619
PositionMiddle
OrganismAcanthamoeba castellanii str. Neff
KingdomAmoebozoa
LineageEukaryota> Amoebozoa> Discosea> Longamoebia> Centramoebida> Acanthamoebidae> Acanthamoeba.
Aromaticity0.07
Grand average of hydropathy-0.608
Instability index52.85
Isoelectric point4.91
Molecular weight69374.02
Publications
PubMed=23375108

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
carbohydrate binding	GO:0030246	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30465
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.98|      29|      29|     454|     482|       1
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  454-  482 (47.65/32.37)	QPRSQED.TNKLTSKLDQLTFKVEAVNDMR
  483-  512 (43.33/28.78)	QPADNNDlTQEIKGALREVRVLQDSVNEFR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.75|      20|      20|     524|     543|       2
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  524-  543 (34.64/24.83)	KLVGDLKGHVSAEQGNTYNN
  546-  565 (33.11/23.42)	RLIRELQQHVTSVQTLVENN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.43|      13|      20|      81|      93|       3
---------------------------------------------------------------------------
   81-   93 (22.54/10.94)	AAVADGGPVLPVL
  102-  114 (24.89/12.77)	AAPVPTGPTMEVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.51|      11|      29|     390|     400|       5
---------------------------------------------------------------------------
  390-  400 (25.15/12.83)	DPWRRRPPVP..P
  419-  431 (18.36/ 7.47)	EPVKPNPYLPkdP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.31|      40|     271|       2|      42|       7
---------------------------------------------------------------------------
    2-   42 (67.97/42.83)	EPRPEGaVQQGTQAPPPQVPVEAVT.DRVTQLQDKI.DG.LGEK
  274-  316 (61.34/34.35)	EPKKEG.ISMGSAEEYRGMAVYFDTfDNDGQRYDPFdDGrRGEK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30465 with Med21 domain of Kingdom Amoebozoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




NANANA









Molecular Recognition Features






MoRF SequenceStartStop




NANANA