<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30465

Description Legumelike lectin family protein
SequenceMEPRPEGAVQQGTQAPPPQVPVEAVTDRVTQLQDKIDGLGEKFYTFIGVLQQDAPPLPFDEFKHLNRTADGPKTVANGANAAVADGGPVLPVLPSMPMPEPAAPVPTGPTMEVMEGEAANMAALLLNNVKEVDMLIDSLPGINSTKPEQLKRLQELEKQNQHTAQSLRETLSWAEETLVLVQQALAEIYADRLQSMNEQAQLDRGGTLPFWEFGGSAIVSEDRIRLTPALQSRVGWVWNSVAADMDAWEVQMDFEIGGGGSRGADGMALWYVAEPKKEGISMGSAEEYRGMAVYFDTFDNDGQRYDPFDDGRRGEKASCSNLNRETRSKMRVIYRDGVIQVETDDGAGHWVPCITHHESLPKGYYFGLSAATGHLTDNHDVFSFITYNLDPWRRRPPVPPRQQEIEPEPEHVETVQSTEPVKPNPYLPKDPPNPYLPQQQQQQHEQQQQQQQQQPRSQEDTNKLTSKLDQLTFKVEAVNDMRQPADNNDLTQEIKGALREVRVLQDSVNEFRRVVMEELSAVNKLVGDLKGHVSAEQGNTYNNVARLIRELQQHVTSVQTLVENNALQELKSGKEELKSVVEKSGSVAWWIYFCFFQVCFGVAFIMWKKAKDDANKKFL
Length619
PositionMiddle
OrganismAcanthamoeba castellanii str. Neff
KingdomAmoebozoa
LineageEukaryota> Amoebozoa> Discosea> Longamoebia> Centramoebida> Acanthamoebidae> Acanthamoeba.
Aromaticity0.07
Grand average of hydropathy-0.608
Instability index52.85
Isoelectric point4.91
Molecular weight69374.02
Publications
PubMed=23375108

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
carbohydrate binding	GO:0030246	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30465
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.98|      29|      29|     454|     482|       1
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  454-  482 (47.65/32.37)	QPRSQED.TNKLTSKLDQLTFKVEAVNDMR
  483-  512 (43.33/28.78)	QPADNNDlTQEIKGALREVRVLQDSVNEFR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.75|      20|      20|     524|     543|       2
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  524-  543 (34.64/24.83)	KLVGDLKGHVSAEQGNTYNN
  546-  565 (33.11/23.42)	RLIRELQQHVTSVQTLVENN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.43|      13|      20|      81|      93|       3
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   81-   93 (22.54/10.94)	AAVADGGPVLPVL
  102-  114 (24.89/12.77)	AAPVPTGPTMEVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.51|      11|      29|     390|     400|       5
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  390-  400 (25.15/12.83)	DPWRRRPPVP..P
  419-  431 (18.36/ 7.47)	EPVKPNPYLPkdP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.31|      40|     271|       2|      42|       7
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    2-   42 (67.97/42.83)	EPRPEGaVQQGTQAPPPQVPVEAVT.DRVTQLQDKI.DG.LGEK
  274-  316 (61.34/34.35)	EPKKEG.ISMGSAEEYRGMAVYFDTfDNDGQRYDPFdDGrRGEK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30465 with Med21 domain of Kingdom Amoebozoa
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