<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30396

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMASGSSMPFSSLQPTPTGGRKPKNLAEFIARVQSERGFRNVTEESLKQEIEDRKNGVADVKEEEDTAMADSNEDEEEPADANAARNEVLRNIDAANNSALMALDFISLLLSKESPAQAGTTLSAQLRDWVGIGSLGIAKREDNDEQKQRDAEKAKDNRDVSLGWALIDINTTKESADKAASHLSKEVEREEKYWGEILAVRQAGWSMCRLPAEKQTLGVRFGFSEASPEFRNSSLAPLRRGDDGSAMLQHGRIGAGCQRLGVTIGRSGKTTGRLAFGTSVPDTALLQDRVLEARNTIFAQELWHELHREAHSLASYGVRASHSAITFNPASGPSLTLELENLEDIANKAEDHPDNTLAEATHLSLHIFLSHAHRLNELQRLRPTPPHQRRNQTQNQYHLLRPIVAKILHDRAIEQVTRFSGDLTTVFRQAGVSAANFILNTPPYPTADLRNSSGGSSVRPSASQALANQITTAPADFQLELILNATCRLQIRGRTFLTPLTTTQFQVQLLPNAAEPPDPEPAPNTLQGSYPPSRDPYPSFSALKDYLTDAATHALTDWSMSLIPPPQAPSPSEPARPEWTKSIRGTAIRDIDTENREVRFDILDDADERPILNVGAAWRTADQKSKIQRWKWSPYGPAEPAQIPHIVNAVVQSSDLATSAA
Length661
PositionHead
OrganismColletotrichum fructicola (strain Nara gc5) (Anthracnose fungus) (Colletotrichum gloeosporioides (strain Nara gc5))
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Sordariomycetes> Hypocreomycetidae> Glomerellales> Glomerellaceae> Colletotrichum> Colletotrichum gloeosporioides species complex.
Aromaticity0.06
Grand average of hydropathy-0.565
Instability index49.49
Isoelectric point5.63
Molecular weight72621.06
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30396
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.27|      38|      57|     511|     550|       1
---------------------------------------------------------------------------
  511-  550 (66.63/38.97)	PNAAEPPDPEPA.P...NTLQGSypPSRDPYPSFSALK.DYLTDA
  564-  606 (54.64/25.77)	PPPQAPSPSEPArPewtKSIRGT..AIRDIDTENREVRfDILDDA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.00|      28|      58|     195|     224|       2
---------------------------------------------------------------------------
  195-  224 (46.60/36.25)	GEILA.VRQAGWSMCRlpAEKQTLGVRFGFS
  251-  279 (45.40/28.36)	GRIGAgCQRLGVTIGR..SGKTTGRLAFGTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.08|      39|      57|     383|     423|       3
---------------------------------------------------------------------------
  383-  423 (63.38/40.60)	PTPPHQRRNQTQNQYhlLRPIVAKILHDRAIEQVTRFSGDL
  443-  481 (64.70/35.71)	PYPTADLRNSSGGSS..VRPSASQALANQITTAPADFQLEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     231.35|      79|      98|       6|      90|       4
---------------------------------------------------------------------------
    6-   90 (110.49/89.58)	SMPFSSLQPTPTGGRKPKNLAEFIArVQSeRGF..RNVTEESLKQEIEDRKNGvADVKeeEDTAMADSNeDEEEPADANAAR..NEVLR
  107-  189 (120.86/74.70)	SLLLSKESPAQAGTTLSAQLRDWVG.IGS.LGIakREDNDEQKQRDAEKAKDN.RDVS..LGWALIDIN.TTKESADKAASHlsKEVER
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30396 with Med17 domain of Kingdom Fungi
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