<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30368

Description Mediator of RNA polymerase II transcription subunit 5
SequenceMKESELLDLLLEARASSSVTWDPLLPLYVDGLCKVGRVKSSSALASLLKHSSILDGSRSDEGEDEGQVSPFKSKMQKPSTLMTDIKVIQDVMVFISTGSIPKTVIEAADIYSATVDWILAVVAWHNHSMDPSQPTGGLMGSPDAVSLFESLGILLAALSGTSKGLEFLSSDFNQGLKTKLGEALSSYLPLCIDVSLPLRHRLEELQKVFNLYPGQPSKALHGPAIDGVNVNALQFESSVMDGPVVNTRAGLYVYINSMVVGRPLVDDTILINYLTNRYQGLNDVLIEEIITAAFDVLSNGVYRNESGRTMLLFRSFLVNKLPAFFAAISAASMVPISMEICISHALSRLDPNAFPSFSQMFSMQGSSVLSDARQEFLFACASHKLIRESSIEQLLGENPMQTLPGGGPYVKDDLISQINNNHERAEQLIGEIESMEGNAGAIVGAVVDVIQNLCHQKETMTLKNICNSLSRRPQTLDVMLLFRTTKQVLQPLCAVLDAWKWDEDQGENQPVYDEFGSILLLVLAFKYRYDLSPSDMGISNNDSFLLKLMDRGTCSQKLSDLSEKQNKDLGAWVGALFIAEGISEETMSSCSPQEFYMLVTTLFDQSIGACESGKLDFDTLKGGFECKNIVARSLPAGYPANHKTDLLEPFLLPSLVVALTWLGNHIWESETDPTIPIKTLHSLVKPSSISGEAQAIHQTVLNITGCPLEEQLKNVRTRNQSRTDINPILDALEPYISFRRVGSCRRSELDTWTSHSAGGLIASIRATLQALVLWSANPGISMAPHAYTHRQLLAGIRMLGATRVLGAIIDEVKLQTEAGSGHIALDIATTMVCAPMTESFAVDQNNYHPVDTSKEALPRCAILTLRDALLLQHENVAKISESDPLRAEVVVRLARRVNILMAPPSQVSNVDVSNIIQNMHLGVEGQEDRMDLEPSAADVARNTVNEDDPDNINQMLDKAAADAVAAGMDGGIGVSQNLRLDSGAGMDAIDDVLNAADMAVGNPEFLDLDMEGMF
Length1014
PositionTail
OrganismPenicillium digitatum (strain PHI26 / CECT 20796) (Green mold)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Penicillium.
Aromaticity0.06
Grand average of hydropathy-0.008
Instability index44.81
Isoelectric point4.80
Molecular weight110415.80
Publications
PubMed=23171342

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30368
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.15|      22|      25|     960|     981|       1
---------------------------------------------------------------------------
  960-  981 (37.27/25.31)	AADAVAAGMDGGIGVSQNLRLD
  988- 1009 (37.88/25.86)	AIDDVLNAADMAVGNPEFLDLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     237.86|      82|     296|     305|     426|       2
---------------------------------------------------------------------------
  341-  426 (139.66/152.78)	CiSHALSRLDPNAFPSF....SQMFSMQGSS..VLSD.ARQEFLF...........ACASHKLIRESSIEqllGENP..MQT.LPGGGPYVKDDLISQINNNHERAE
  554-  623 (57.30/20.15)	C.SQKLSDLSEKQNKDLgawvGALFIAEGISeeTMSScSPQEFYMlvttlfdqsigACESGKL.............D..FDT.LKGG....................
  681-  724 (40.91/10.86)	............................................................HSLVKPSSIS...GEAQaiHQTvLNITGCPLEEQLKNVRTRNQSRTD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.94|      45|     639|     176|     225|       4
---------------------------------------------------------------------------
  176-  225 (70.35/53.44)	LKTklgEALSSYLPLCIDVSL...PLRHRLEELQKvfNLYPGQPSK.ALHGPAI
  814-  862 (71.60/41.38)	LQT...EAGSGHIALDIATTMvcaPMTESFAVDQN..NYHPVDTSKeALPRCAI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30368 with Med5 domain of Kingdom Fungi
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