<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30368
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MKESELLDLLLEARASSSVTWDPLLPLYVDGLCKVGRVKSSSALASLLKHSSILDGSRSDEGEDEGQVSPFKSKMQKPSTLMTDIKVIQDVMVFISTGSIPKTVIEAADIYSATVDWILAVVAWHNHSMDPSQPTGGLMGSPDAVSLFESLGILLAALSGTSKGLEFLSSDFNQGLKTKLGEALSSYLPLCIDVSLPLRHRLEELQKVFNLYPGQPSKALHGPAIDGVNVNALQFESSVMDGPVVNTRAGLYVYINSMVVGRPLVDDTILINYLTNRYQGLNDVLIEEIITAAFDVLSNGVYRNESGRTMLLFRSFLVNKLPAFFAAISAASMVPISMEICISHALSRLDPNAFPSFSQMFSMQGSSVLSDARQEFLFACASHKLIRESSIEQLLGENPMQTLPGGGPYVKDDLISQINNNHERAEQLIGEIESMEGNAGAIVGAVVDVIQNLCHQKETMTLKNICNSLSRRPQTLDVMLLFRTTKQVLQPLCAVLDAWKWDEDQGENQPVYDEFGSILLLVLAFKYRYDLSPSDMGISNNDSFLLKLMDRGTCSQKLSDLSEKQNKDLGAWVGALFIAEGISEETMSSCSPQEFYMLVTTLFDQSIGACESGKLDFDTLKGGFECKNIVARSLPAGYPANHKTDLLEPFLLPSLVVALTWLGNHIWESETDPTIPIKTLHSLVKPSSISGEAQAIHQTVLNITGCPLEEQLKNVRTRNQSRTDINPILDALEPYISFRRVGSCRRSELDTWTSHSAGGLIASIRATLQALVLWSANPGISMAPHAYTHRQLLAGIRMLGATRVLGAIIDEVKLQTEAGSGHIALDIATTMVCAPMTESFAVDQNNYHPVDTSKEALPRCAILTLRDALLLQHENVAKISESDPLRAEVVVRLARRVNILMAPPSQVSNVDVSNIIQNMHLGVEGQEDRMDLEPSAADVARNTVNEDDPDNINQMLDKAAADAVAAGMDGGIGVSQNLRLDSGAGMDAIDDVLNAADMAVGNPEFLDLDMEGMF |
Length | 1014 |
Position | Tail |
Organism | Penicillium digitatum (strain PHI26 / CECT 20796) (Green mold) |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes>
Eurotiomycetidae> Eurotiales> Aspergillaceae> Penicillium.
|
Aromaticity | 0.06 |
Grand average of hydropathy | -0.008 |
Instability index | 44.81 |
Isoelectric point | 4.80 |
Molecular weight | 110415.80 |
Publications | PubMed=23171342
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 ARBA:ARBA00003669
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP30368
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 75.15| 22| 25| 960| 981| 1
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960- 981 (37.27/25.31) AADAVAAGMDGGIGVSQNLRLD
988- 1009 (37.88/25.86) AIDDVLNAADMAVGNPEFLDLD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 237.86| 82| 296| 305| 426| 2
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341- 426 (139.66/152.78) CiSHALSRLDPNAFPSF....SQMFSMQGSS..VLSD.ARQEFLF...........ACASHKLIRESSIEqllGENP..MQT.LPGGGPYVKDDLISQINNNHERAE
554- 623 (57.30/20.15) C.SQKLSDLSEKQNKDLgawvGALFIAEGISeeTMSScSPQEFYMlvttlfdqsigACESGKL.............D..FDT.LKGG....................
681- 724 (40.91/10.86) ............................................................HSLVKPSSIS...GEAQaiHQTvLNITGCPLEEQLKNVRTRNQSRTD
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 141.94| 45| 639| 176| 225| 4
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176- 225 (70.35/53.44) LKTklgEALSSYLPLCIDVSL...PLRHRLEELQKvfNLYPGQPSK.ALHGPAI
814- 862 (71.60/41.38) LQT...EAGSGHIALDIATTMvcaPMTESFAVDQN..NYHPVDTSKeALPRCAI
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