<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30344

Description Putative mediator of RNA polymerase II transcription subunit 37c
SequenceMAKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDPSVQSDMKLWPFKVVAGPGDKPMIVVSYKGEDKQFSAEEISSMVLTKMKEIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVKEAEKYKAEDEEHKKKVDAKNSLENYAYNMRNTIKDDKIASKLGADDKKRIENAVDGAISWLDSNQLAEVDEFEDKMKELEGICNPIIAKMYQGAGADMGAAAGMDEDAPAAGGSAAGPKIEEVD
Length649
PositionUnknown
OrganismZea mays (Maize)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> PACMAD clade> Panicoideae> Andropogonodae> Andropogoneae> Tripsacinae> Zea.
Aromaticity0.06
Grand average of hydropathy-0.403
Instability index31.50
Isoelectric point5.20
Molecular weight70955.62
Publications
PubMed=19965430

Function

Annotated function 
GO - Cellular Component
cell wall	GO:0005618	IEA:EnsemblPlants
cytoplasm	GO:0005737	IBA:GO_Central
cytosol	GO:0005829	IEA:EnsemblPlants
Golgi apparatus	GO:0005794	IEA:EnsemblPlants
mitochondrion	GO:0005739	IEA:EnsemblPlants
plasma membrane	GO:0005886	IEA:EnsemblPlants
vacuolar membrane	GO:0005774	IEA:EnsemblPlants

GO - Biological Function
ATP binding	GO:0005524	IBA:GO_Central
ATPase activity	GO:0016887	IBA:GO_Central
heat shock protein binding	GO:0031072	IBA:GO_Central
misfolded protein binding	GO:0051787	IBA:GO_Central
protein folding chaperone	GO:0044183	IBA:GO_Central
ubiquitin protein ligase binding	GO:0031625	IEA:EnsemblPlants
unfolded protein binding	GO:0051082	IBA:GO_Central

GO - Biological Process
cellular response to unfolded protein	GO:0034620	IBA:GO_Central
chaperone cofactor-dependent protein refolding	GO:0051085	IBA:GO_Central
protein refolding	GO:0042026	IBA:GO_Central
protein ubiquitination	GO:0016567	IEA:EnsemblPlants
response to bacterium	GO:0009617	IEA:EnsemblPlants
response to cadmium ion	GO:0046686	IEA:EnsemblPlants
response to heat	GO:0009408	IEA:EnsemblPlants
response to virus	GO:0009615	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30344
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     275.64|      92|     396|     101|     239|       1
---------------------------------------------------------------------------
  120-  217 (133.28/128.67)	EEISSMVLTKMKEIAEAYL......GSTIKNAVVTVPAYFNDSQRQATKDagVISGLNVMRIINePTaAAIAYGLD.KKATSSGEKNVLIFDLggGTFDVSLLTI
  308-  406 (142.36/81.89)	EELNMDLFRKCMEPVEKCLrdakmdKSTVHDVVLVGGSTRIPKVQQLLQD..FFNGKELCKSIN.PD.EAVAYGAAvQAAILSGEGNEKVQDL..LLLDVTPLSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.27|      18|      21|      37|      54|       2
---------------------------------------------------------------------------
   15-   32 (19.08/10.31)	....TTYSCVGVWQHDRveIIA
   37-   54 (32.67/22.65)	NR..TTPSYVAFTDTER..LIG
   59-   77 (24.52/15.26)	NQvaMNPTNTVF.DAKR..LIG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30344 with Med37 domain of Kingdom Viridiplantae
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