<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30332

Description Uncharacterized protein
SequenceMSNNPQYPGLQPLRPPIAGSLDPPRNFVPPMPVQFRPAVPTQQSQQFISMPSQHYQHQPVGPGGVPLIGVGIPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNMHIPSESMMQQSDSQAHSQAPNGYTPGLGGPGMPLSSSYTFAPSTYGQVQANFNSTGQFQPVPQIHALTGSSSQSITTGATLQSNGGQPLVTTVMPLATIAQPQLTKNGPTDWIEHTSATGRTFYYNKKTKVSSWEKPFELMTPIERVDATTNWKEYTSPDGRKYYYNKITNESKWSIPEELKLAREQVEKAIVSGSRPEALLNSHPQPSPTPSATEATPNTDNSTLPSQGEPSSPVSVAPVVTTSISNPQSEMPSGPSLSTSANAITGAKVDELEAPVNTVTPSDTCVGSDKAVVTDINTAVTPMNDVNNDSAQDTLGSADRVPVEDKEDGKNDLIGEKSNDVAAETKAVEPEPPVYANKMEAKDAFKALLESVNVGSDWTWDRSMRLIINDKRYGALKTLVERKQAFNEYLNQRKKQEAEEKRMKQKKAREDFKKMLEESTDLTSSTRWSKAVSIFENDERFKAVERDRDRRDMFESFLEELLNKERAKVQEERKRNIMEYRKFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLRDLEKEEEEQKKIQKEEVRKTERKNREEFRKLMGEHIASGILTAKTHWRDYYTKVKDLHAYVAVASNTSGSTPKDLFEDVAEELEKQYHEEKSRIKDAVKLTKITLSSTLTFEDFKSVLLKDISTPPISDFNLKLVFDELLERVKEKEEKEAKKRKRLADDFFHLLHSTKDFTVSSKWEDCRPLVEDSQEFRSIGDESLCKEVFEEYIAQLKEEAKENERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKRQSPVYEMDKEKTKKSRRHASGHESDEGRHKRHKRDHRREGDLEDGEFGDDHVDRWFCTEEFATRMKG
Length1020
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.054
Instability index57.56
Isoelectric point6.38
Molecular weight116337.63
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30332
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     478.31|      66|      66|     539|     604|       1
---------------------------------------------------------------------------
  474-  530 (72.68/43.13)	.........EAKDAFKALL.E...SVNVGSDWTWDRSMRLIINDKRYGALK.........TLVE...RKQAFN....EYLN.Q...RKK.Q
  539-  604 (104.81/65.53)	Q.......KKAREDFKKMLEE...STDLTSSTRWSKAVSIFENDERFKAVE.........RDRD...RRDMFESFLEELLNKE...RAKVQ
  607-  673 (86.33/52.65)	R.......KRNIMEYRKFLES...CDFIKASTQWRKVQDRLEADERCSRLE.........K.ID...RLEIFQDYLRD.LEKEeeeQKKIQ
  674-  748 (71.69/42.44)	KeevrkteRKNREEFRKLMGEhiaSGILTAKTHWRDYYTKVKDLHAYVAVA.........SNTSgstPKDLFEDVAEEL...E...K.QYH
  749-  811 (59.09/33.66)	E.......EKSR......IKD...AVKLTKIT.LSSTLT.FED...FKSVLlkdistppiSDFN...LKLVFDELLERVKEKE...E.KEA
  814-  875 (83.71/50.82)	R.......KRLADDFFHLLHS...TKDFTVSSKWEDCRPLVEDSQEFRSIG.........DESL...CKEVFEEYIAQL..KE...EAK..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     124.53|      19|      19|      22|      40|       2
---------------------------------------------------------------------------
   24-   43 (30.18/15.53)	PRNFV..P..PMPVQFRPAVP........tQQ
   44-   73 (21.79/ 8.91)	SQQFIsmP..SQHYQHQPVGPggvpligvgIP
   74-   98 (26.56/12.67)	PQNQQ..PqfSQPIQQLPPRP.....spqlPP
  121-  137 (21.26/ 8.49)	..QQS..D..SQAHSQAPNGY.........TP
  339-  359 (24.73/11.23)	PSQGE..P..SSPVSVAPVVT.......tsIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      55.14|      15|      15|     878|     892|       3
---------------------------------------------------------------------------
  891-  906 (19.54/ 8.78)	DReERER.RKGKQRKEK
  907-  922 (17.96/ 7.43)	EG.GRERgKDEAHKKDK
  963-  977 (17.64/ 7.16)	EK.TKKS.RRHASGHES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     206.14|      39|      40|     222|     260|       4
---------------------------------------------------------------------------
  151-  177 (23.12/ 8.10)	............TFapstYGQVQANFNS.TGQFQ...PVPQIH
  180-  209 (43.56/20.97)	TGSSSQSITTGATL....QSNG.......GQP..LVTTVMPLA
  222-  260 (72.07/38.93)	TDWIEHTSATGRTF....YYNKKTKVSSWEKPFELMTPIERVD
  263-  301 (67.39/35.99)	TNWKEYTSPDGRKY....YYNKITNESKWSIPEELKLAREQVE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     122.04|      29|      66|     376|     404|       5
---------------------------------------------------------------------------
  376-  404 (46.41/31.89)	NAITGAKVDELEAPVNTV...TPSDTCVGSDK
  405-  434 (33.29/20.41)	AVVT..DINTAVTPMNDVnndSAQDTLGSADR
  445-  472 (42.34/28.33)	NDLIGEKSNDVAAETKAV...EP.EPPVYANK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30332 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAKENERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKRQSPVYEMDKEKTKKSRRHASGHESDEGRHKRHKRDHRREGDLEDGE
2) EQVEKAIVSGSRPEALLNSHPQPSPTPSATEATPNTDNSTLPSQGEPSSPVSVAPVVTTSISNPQSEMPSGPSLSTSANAITGAKVDELEAPVNTVTPSDTCVGSDKAVVTDINTAVTPMNDVNNDSAQDTLGSADRVPVEDKEDGKNDLIGEKSNDVAAETKAVEPEPPVYAN
3) MSNNPQYPGLQPLRPPIAGSLDPPRNFVPPMPVQFRPAVPTQQSQQFISMPSQHYQHQPVGPGGVPLIGVGIPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNMHIPSESMMQQSDSQAHSQAPNGYTPGLGGPGMPLSSSYTF
4) QANFNSTGQFQPVPQIHALTGSSSQSITTGATLQSNGGQP
873
298
1
161
999
471
152
200










Molecular Recognition Features






MoRF SequenceStartStop




NANANA