<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30325

Description Uncharacterized protein
SequenceMQRYHAGSCTSAVNNSAIGGPSTRDIGRTDSSSLPANFPVSSRRQPPLTPYKLKCDKEPLNSRLGPPDYHPQTPNCPEEILTREYLQSGYRDTVEGLEESREISLTQVQNFSKKVVLNCKEAIRKRLRAINESRVQKRKAGQVYGVALSGSQLAKPGVFPEQRPCPEDFRKKWIEGLSQPHKRLRSLTDLVPHVRRKSLSEVLIRNNVPLLRATWFIKVSYLNVVRPGSASIPSGTADKTQLSCSELWTKDVIEYLQTLLDEFFSKNSSHFTPHNRDRSPQVPYTASFQHRSDQLLSVADGEEPSLHFRWWYIVRLLQWHHAEGLLLPSLIIDWVLRQLQEKQLLEIWQLLLPIVYGFLEIVVLSQTYVRTLAGVALRIIRDPAPGGSDLVDNSRRAYTTSALIEMLRYLIFAAPETFVALDCFPLPSSVVSHTINDGNFVLKATEAAGKIKSSSEDVVCLFRSKGFDAQFQSLAFDHVISCIQECVEDLTKAVSPGYPGQCLAKAAQALDKSLVLGDIHGAYKFLFEDHCDETVSEGWVAKVSHCLRLSLKWFVTVNKSLVYSVFFLCEWATCDFRDFRNAPPCDVKFTGRKDLSHVHIAIRLLKMKLRDMQISPKHKSGSTRGCGVSYLAKCSSQQRNQNFVNNAFKIKSSSRNLDQNICSSAVFESPGPLHDIIVCWIDQHMVHKGEGLKRLHLFIVELIRAGIFYPLAYVRQLIVSGIMDMNVNVVDLERQKRHCRILKQLPGKFVRRALVESGISEGPRLTEALQVYLNERRFILRGSLWENHGNANNVNISSLKQNHCTSSTKDKTSTVSIDPWKSVFSNKTSSKNAKDDNGVEELKTFISTLLQLPKSLSNLSTTGLDESQGSVRKPIGSHNKSDLVEATPGCEECRKAKRQKLSEERSSFVQAPSPILSDDEDTWWVKKGLKSSEHLKVDQPLKPTKQVTKTRQKTVRKTQSLAQLAASRIEGSQGASTSHVCGNKVSCPHHRTAMDGDTTRSVDGIRSGHCEDIVSIGRALKQLRFVERKEVTLWLMTVVRQLIEESEKNVGKVSQFGRPFATVDDKSSIRWKLGEDELSALLYLMDVSDDLVSAVKFLLWLLPKVYSSPNSTIHSGRNALMLPRNVENQACDVGEAFLLSSLRRYENILAAADLLPEALSSIMHRAAAIIASNGRVSGSGALTFACYLLKKYGNVVSVIEWEKSFKSTCDKRLASEIESGRSVDGELGLPLGVPAGVEDPDDFFRQKISGGRLPSRVGSGMRDVVQRNVEEAFRDLFGKDRKLFAAGTPKGPAFEKWDNGYQIAQQIVMSLIDCIRQTGGAAQEGDPSLVTSAVSAIVGSVGPTLAKLPDFSAGSNHSNMSLATSSLNYAKCILRMHITCLCLLKEALGERQSRVFEIALAMEASTALAGVFAPSKASRAQFQMSPETHDTGTISNDVAANNTSKIVVARTTKISAAVSALVVGAIICGVTSLERIVTILRLKEGLDVVHFVRSTRSNSNGNVRSVGAFKLDSSVEVHVHWFRLLVGNCRTICEGLVVDLLGEPSIVALSRMQRMLPLTLVFPPAYSIFAFVMWRPFVMNANVAVREDMNQLYQSLTIAISDAIKHWPFRDVCLRECQGLYDLMAADTSDAEFATLLELNGSDMHSKSLAFVPLRARHILNAMIDCKMPQSIYTKDEGSRNYGHGESKIDFTDSESTLQDKLVDVLDALQPAKFHWQWVELRLLLNEQALIEKLKTHDMSLADAIQLSSPSSEKGAASENENNFIEIILTRLLVRPDAAPLFSELVHLFGKSLEDSMLLQAKWFLAGQDVLFGRKTIKQRLINIAETKRFSVKTQFSEPWGWCSPCKNPVALKGDKMKVDPMPLEEGEVAEEGMDAKRSIKGFSQVFDSESSTSKQQHGTERALLELILPCIDQSSDESRNSFASDLIKQLNYIEQQITLVTRGPSKPTASTPVTEGQTNKVNSRKTIRGGSPGLARRPTPAPDSSPLSPAALRASISLRVQLLMRFLPILCSDGESSARSMRYMLASVLLRLLGSRVVHEDATVNPMHYTPLRREAESHAEASFVDSSAEGLFDHLLLILHGLLSSSPPSWLRSKPVSKTTNEPTREFSGFEREPLEALQNHLDNMQLPDTIRRRIQAAMPLLPPSIRCSFSCQLPTVPASALVSLQPNTTNSGFNSGSSTVPQRNLVPSSRTTTSGKSKQHDNDLDVDPWTLLEDGAGSCPSASNTDIIGSGDRVNIRAASWLKGAVRVRRTDLTYVGAVDEDN
Length2266
PositionKinase
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.07
Grand average of hydropathy-0.245
Instability index50.71
Isoelectric point8.76
Molecular weight251226.30
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30325
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.06|      32|     197|     439|     482|       1
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  439-  482 (46.71/53.51)	NFVlkatEAAGKIKSSSEDV...VC...LFRSKGfdaqfqslAFDHVISC
  642-  679 (51.35/31.07)	NFV....NNAFKIKSSSRNLdqnICssaVFESPG........PLHDIIVC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.48|      19|     195|     189|     236|       2
---------------------------------------------------------------------------
  193-  217 (27.76/62.00)	HVRRKSLSEVLirnnvpLLRATWFI
 1787- 1805 (35.72/ 6.39)	HLFGKSLEDSM......LLQAKWFL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.72|      38|     195|    1748|    1785|       3
---------------------------------------------------------------------------
 1748- 1785 (61.82/42.13)	SSPSSEKGAASENENNFIEIILTRLLVRPDAAPLFSEL
 1951- 1988 (66.90/46.32)	STPVTEGQTNKVNSRKTIRGGSPGLARRPTPAPDSSPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.49|      25|     364|     165|     191|       4
---------------------------------------------------------------------------
  165-  191 (38.17/40.86)	CPEDFRKKWIEGLSQPHkRLrSLTDLV
  531-  555 (47.32/37.71)	CDETVSEGWVAKVSHCL.RL.SLKWFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.14|      21|     366|       3|      28|       5
---------------------------------------------------------------------------
    6-   26 (38.90/32.94)	AGSCTSAVNNSAIGGPSTRDI
 2219- 2239 (39.24/15.90)	AGSCPSASNTDIIGSGDRVNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     198.20|      52|     616|    1206|    1258|       7
---------------------------------------------------------------------------
  984- 1012 (30.34/10.91)	KVSCpHHRTAMDGDTTR.SVD.......GIRSGhCED..................
 1206- 1257 (88.57/55.34)	KSTC.DKRLASEIESGR.SVDGELGLPLGVPAG.VEDPDDFFRQKISGGRLPSRV
 1816- 1866 (79.30/51.32)	..TI.KQRLINIAETKRfSVKTQFSEPWGWCSP.CKNPVALKGDKMKVDPMPLEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     247.88|      67|     616|     243|     311|       8
---------------------------------------------------------------------------
  243-  311 (113.17/69.67)	SCSELWTKDVIEYLQTLLDEFFSKNSSHFTP........HNRDRSPQV...PYTASFQHRSDQLLSVADGEEPSLHfrWW
  798-  843 (42.45/18.68)	......................SLKQNHCTS........STKDKTSTVsidPWKSVFSNKTSSKNAKDDNGVEELK....
  855-  924 (92.26/50.72)	SLSNLSTTGLDESQGSVRKPIGSHNKSDLVEatpgceecRKAKRQKLS...EERSSFVQAPSPILS..DDEDT.....WW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.47|      12|      17|    1116|    1128|      18
---------------------------------------------------------------------------
 1116- 1128 (17.78/12.37)	GrNALMLP..RNVEN
 1134- 1147 (16.68/ 6.33)	G.EAFLLSslRRYEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.75|      20|     530|     742|     763|      23
---------------------------------------------------------------------------
  742-  763 (30.39/24.88)	LKQLPGKfvRRALVESGISEGP
 1273- 1292 (37.36/23.44)	FRDLFGK..DRKLFAAGTPKGP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30325 with Med12 domain of Kingdom Viridiplantae
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