<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30319

Description Uncharacterized protein
SequenceMANNSQPSSMQFRPVTQAQQGQPFVPMNSQQFGPAGHAIPSSNAGMPVIQGQQLQYSQPMQQLTQRPMQPGHPAPSSQAIPMQYIQTNRPLTSIPPHSQQNVPPLSNHMPGLAVSVAAPHSSYFTLSYGQQQDNANALAQYQHPPQMFAPPSGQPWPSSASQSAVAVTSVQPAGVQSSGATSTDAVINATNQQSLSDWQEHTSADGRRYYYNKRTRQSSWEKPLELMSPIERADASTVWKEFTSSEGRKYYYNKVTQQSTWSIPEELKLAREQAQNAANQGMQSETSDTCNAVVSSTETPTPTAANAASLNTSLTSNGLASSPSSVTPIAATDSQRLVSGLSGTSVSHSMATPSTTGVEPSTVVTTSAAPTIVAGSSGLAENSPQQPKMPPVVENQASQDFASANGSSLQDIEEAKRPLPVVGKNNVTPPEEKTNDDETLVYANKLEAKNAFKALLESVSVQSDWTWEQAMREIINDKRYNALKTLGERKQAFNEYLGQRKKLEAEERRMKQKRAREEFTKMLEECKELTSSMRWSKAISMFENDERFNAVERPRDREDLFESYMVELERKEKENAAEEHRQNIAEYRKFLESCDYVKVNSPWRKIQDRLEDDDRYLRLEKIDRLLVFQDYIRDLEKEEEEQKRIQKDRIRRGERKNRDAFRKLLGEHVSAGILTAKTQWREYCLKVRDLPQYQAVASNTSGSTPKDLFEDVAEDLEKQYHEDKTLIKDTVKSGKITVVTTSVFEEFKVAVLEGAACQTISEINLKLIFEELLERAKEKEEKEAKKRQRLADDFTNLLYTFKDITTSSKWEDCKSLFEETQEYRSIGDESYSREIFEEYITYLKEKAKEKDRKREEEKAKKEKEREEKRKEKEKKEKDREREKDKSKERNKKDETDSDNQDMADSHGYKEEKKKEKDKERKHRKRHQSSIDDVDSEKEEKEESKKSRRHGSERKKSRKHANSPESDNENRHRRHKRDHWDGSRKTGGHEELEDGELGDDAEN
Length1002
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.135
Instability index54.26
Isoelectric point6.12
Molecular weight114375.26
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30319
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     145.46|      36|      38|     198|     235|       1
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  198-  226 (52.68/27.76)	..............WQEHTSADGRRYYYNKRTRQSSWEKPLEL
  229-  267 (63.04/37.87)	PIERADA....stvWKEFTSSEGRKYYYNKVTQQSTWSIPEEL
  268-  300 (29.73/ 9.67)	KLAREQAqnaanqgMQSETSDTCNAVV.......SSTETP...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     110.26|      24|      25|     844|     867|       2
---------------------------------------------------------------------------
  844-  867 (42.01/19.23)	KEKAKEKDRKREEEKAKKEKEREE
  872-  894 (36.59/15.80)	KEK.KEKDREREKDKSKERNKKDE
  900-  920 (31.66/12.69)	QDMADSHGYK.EEKK..KEKDKER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     130.19|      28|      29|     301|     328|       3
---------------------------------------------------------------------------
  301-  328 (46.51/26.52)	TPTAANAASLNTS.......LTSNGLA.SSPSS..................VTP
  330-  353 (30.60/15.08)	..AATDSQRLVSG.......LS..GTS.VSHSM..................ATP
  354-  389 (29.06/13.97)	STTGVEPSTVVTTsaaptivAGSSGLAeNSPQQ..................PKM
  390-  429 (24.02/10.34)	PPVVENQASQDFA........SANG......SSlqdieeakrplpvvgknnVTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     116.30|      19|      51|       5|      23|       4
---------------------------------------------------------------------------
    5-   23 (39.82/20.80)	SQP.SSMQFRPVTQAQQGQP
   40-   56 (23.95/ 9.86)	..P.SSNAGMPVIQGQQLQY
   57-   73 (24.92/10.53)	SQPmQQLTQRPM...QPGHP
  142-  155 (27.62/12.39)	QHP.PQM.FAP....PSGQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     456.08|      64|      66|     463|     526|       5
---------------------------------------------------------------------------
  409-  459 (42.04/17.63)	........LQDIEEAKR..PL..PVVGknnvtppEE.KTNDDETLVYANKLE..................AK............NAF.KALLE..SV
  463-  526 (100.22/51.30)	SDWTWEQAMREIINDKRYNAL..KTLG.......ER.KQAFNEYLGQRKKLEAEERRMKQK.R.......AR............EEF.TKMLE..EC
  531-  594 (91.91/46.49)	SSMRWSKAISMFENDERFNAV..ERPR.......DR.EDLFESYMVELERKEKENAAEEHR.Q.......NI............AEY.RKFLE..SC
  599-  668 (84.47/42.19)	VNSPWRKIQDRLEDDDRYLRL..EKI........DR.LLVFQDYIRDLEKEEEEQKRIQKD.RirrgerkNR............DAF.RKLLG..EH
  676-  757 (58.79/27.33)	AKTQWREYCLKVRDLPQYQAVasNTSG.......STpKDLFEDVAEDLEKQYHEDKTLIKD.T.......VKsgkitvvttsvfEEFkVAVLEgaAC
  761-  801 (49.70/22.07)	SEINLKL................................IFEELL.ERAK.EKEEKEAKKRqR.......LA............DDF.TNLLY..TF
  808-  840 (28.94/10.06)	SKWEDCKSLFE..ETQEYRSI..GDES.......YS.REIFEEYI....................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.65|      20|      28|     922|     949|       6
---------------------------------------------------------------------------
  922-  941 (31.98/ 9.92)	HRKRHQSSIDDVDSEKEEKE
  952-  971 (30.67/21.33)	ERKKSRKHANSPESDNENRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.54|      22|      75|      81|     122|       7
---------------------------------------------------------------------------
   74-  108 (28.85/46.72)	APSSQaiPMQYIQtnrpltsipphSQQNVPPLSNH
  118-  141 (34.69/12.01)	APHSSyfTLSYGQ...........QQDNANALAQY
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30319 with Med35 domain of Kingdom Viridiplantae
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