<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30312

Description Uncharacterized protein
SequenceMEGEGGGEGLNQAVQQQLNLKQVKTRAISLFKAISRILEDFEAYGRTNSTPKWQDILGQYSMVNLELFNIVDDIKKVSKAFVVHPKNVNAENATILPVMLSSKLLPEMETDDTAKRDQLLLGMQNLPIGMQMEKLKARLDLISAACEGAEKVLADTRKAYCFGTRQGPAIAPTLDKGQAAKIQEQENLLRSAVNAGDGLRIPGDQRHITPAQPPLHLADALPVIVNDPTAQPQLSSNTMPAQNSLLQTSSASQLLGRSAASPSGATSTTSFDNTTASPIPYANSPRSSTNMMNTPSPQPQTTQQQPQVQQQQRQKLMQLPKQQQQHHQILAQQQQFRQSAMQGLGQLHGQHQMQFSQPLGHQQFQGRQLPSGHVQHGIGQSQLNQGNQMTRLSQFSGPANSALFSAAQTTPNTQMIPNISGTLPSQSLLQRTQFGLSGNNPQRSHPSQMLSDQMFNMGGGNPGGMMPIQQQQQHGSQAFGSMASNAQNLQSGLVTLQNTQQNHPNFSQQRQQNLQ
Length515
PositionHead
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.04
Grand average of hydropathy-0.647
Instability index51.04
Isoelectric point9.41
Molecular weight56171.50
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30312
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.46|      16|      18|     424|     441|       1
---------------------------------------------------------------------------
  424-  440 (24.33/ 7.77)	PSQsLLQRTQFGLSGNN
  446-  461 (26.13/ 6.63)	PSQ.MLSDQMFNMGGGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     245.45|      48|     146|     316|     365|       3
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  291-  315 (47.02/12.42)	MMNTPSPQPQTT..Q.........QQPQVQQQ..........QR..Q..................K
  316-  365 (89.38/32.96)	LMQLPKQQQQHH..QIL......AQQQQFRQSamQGLG..QLHG..QHQM....QFSQPLGHQQFQ
  366-  405 (49.48/13.41)	GRQLPSGHVQH........................GIGqsQLNQ..GNQMtrlsQFSGPANSALFS
  465-  515 (59.56/17.48)	MM..PIQQQQQHgsQAFgsmasnAQNLQ......SGLV..TLQNtqQNHP....NFSQQ.RQQNLQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.16|      46|     114|       9|      59|       4
---------------------------------------------------------------------------
   12-   59 (70.20/65.68)	QAVQQQLNLKQVKTRaISLFKA....ISRILEDF.EAY..GrTNSTPKWQDIL..GQ
  124-  178 (55.96/34.25)	QNLPIGMQMEKLKAR.LDLISAacegAEKVLADTrKAYcfG.TRQGPAIAPTLdkGQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30312 with Med8 domain of Kingdom Viridiplantae
Unable to open file!