<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30308

Description Uncharacterized protein
SequenceMAMDEYECHEMVHVAVGKSLKKAATLLQWCFTHFSKPQIFLLHVHQPSTMIPTLLGKLPASQASPEVVSAYRIEEKEDTKRLLEKYLSLCRAAKVKASSVIGEADQVQKGIVDLVTVHNVRKLVIGAIPENCMKIKRNSSKANYAAKNAPPFCEIWFVYNGKHIWTREASETPRSLSSRAQPETTTAESLSCRSFHDGTKELLHSECLQLNSTKTTRSMVQSEIIEAEATFSSKSSSCNSHCSPQHSAGWYLDTHSEFEEETIDSQLIETKREAKAATDKALAELLKSKRLEVKAIEAISKVNFFESAHAHEVKLRKEAEDALRATIQEQQMFLDEKEEIARELERTVRSISLLGNCAHETNHKRDEAENELSLIQASISNLWHEKQQIRQQKMEALHWLERWKSCGQVGADHCNGVIGFAEEFPELAEFSLSDLQNATCNFSESFKVMEGGYGSIYKGEMLGRTVAIRKLHPHNMQGSSEFHQEAQILGSLQHPHLVTLLGVCPEAWSFVYEYLPSGSLQDYLFRKSSFLPLTRNIRAQWIAEIATALCFLHSSKPETIIHGGLTLETVLLDSALSCKICEFGFSRLVKEESVYLPNFHFSTEPKGSFTYTDPEFQRTGVLTPKSDIYSFGIIILQLLTGRTPVGLVGEVRRAVSCGKLYPILDSSAGEWNSTMATRLAELGLQCCQLNSRVRPELTPSLVRELKQLLVLEERPVPSFFLCPIFQEIMHDPQVAADGFTYEGKAISEWLENGHETSPMTNLKLTHLNLTPNHALRLAIQGWLCKS
Length786
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.08
Grand average of hydropathy-0.286
Instability index47.08
Isoelectric point6.20
Molecular weight88369.86
Publications
PubMed=20075913

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30308
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      78.53|      19|      19|     188|     206|       1
---------------------------------------------------------------------------
  188-  206 (34.40/19.07)	ESLSCRSFHDGTKELLHSE
  208-  223 (20.31/ 8.55)	..LQLNSTK.TTRSMVQSE
  234-  247 (23.82/11.17)	KSSSCNS.HCSPQ...HS.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.28|      17|      19|     408|     424|       2
---------------------------------------------------------------------------
  408-  424 (31.31/18.96)	QVG.ADHCNGVIGFAEEF
  429-  446 (25.97/14.60)	EFSlSDLQNATCNFSESF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.45|      11|      18|     266|     276|       3
---------------------------------------------------------------------------
  266-  276 (18.19/10.63)	QLIETKR.EAKA
  284-  295 (13.26/ 6.02)	ELLKSKRlEVKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      91.17|      27|     519|      24|      55|       5
---------------------------------------------------------------------------
   24-   55 (42.46/47.95)	ATLLqwCFTHFSKPQIFllhVHQPSTMIPTLL
  546-  572 (48.71/34.84)	ATAL..CFLHSSKPETI...IHGGLTLETVLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30308 with Med32 domain of Kingdom Viridiplantae
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