<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30307

Description Uncharacterized protein
SequenceMASPAWLPQESQPPVSGETPLPMASSAHTTPSTAPAPAPPFAYGMLQNVNASGSSQQSSTHPGMKSNSAVNPMVVQPPGVSLHAAPSFSYNIPQSGAIFSSNQQHAQSSTNMPDSVAQDVGKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWMPTAMSFPVLPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSVPAMAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTSTPSSSHQLRGTTALQTEVISGPADDKKKLNSVDTVNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYDKPAGFKGESHQVSAQPIPVSMMDLPGTDWRLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVSNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSPSALDLIKKKLQDSGTPVASSSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKAKDTNGDANVSDTSSDSEDEDNGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAALKAAIEGFKRLLDEASEDINYNTDYQTFRKKWRNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAASFKSMLKERGDISFNSRWSRVKENLRDDPRYKCVRHEDREVLFNEYISELKAAEHAAERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKDAVTLFQALLVETIKDPLVQIFCVWYHGRNLSLN
Length838
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.679
Instability index54.68
Isoelectric point8.04
Molecular weight91318.36
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30307
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     305.01|      76|     133|     572|     648|       1
---------------------------------------------------------------------------
  572-  648 (124.94/98.01)	FKEMLKERGVAPF.SKWEKELPKIVFDPRFKAIpSYSARRSLFEHYVKT.RAEEERKEKRAALKAAIEGFKRLLDEASE
  659-  697 (62.95/42.41)	FR................KKWRN...DPRFEAL.....................DRKEQEHLLNERVLPLKKAAEEKAQ
  707-  782 (117.12/86.05)	FKSMLKERGDISFnSRWSRVKENLRDDPRYKCV.RHEDREVLFNEYISElKAAEHAAE.RET.KAKREEQDKLRERERE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     219.34|      38|      40|      58|      95|       2
---------------------------------------------------------------------------
   58-   95 (68.73/31.07)	SSTHPG..MKSNSAVNP..MV.......VQPPGVS.LHAAPSFSYNIPQS
  116-  160 (38.41/13.83)	VAQDVG.kLSSASSIPH..SVpahtstsIMPPPSD.PNYRPATSW.MPTA
  163-  195 (45.03/17.59)	FPVLPV..MPTQG..NP............GPPGLA.SSAIISSNPAAPST
  197-  223 (27.14/ 7.42)	TDSSPAalLRPNMPTSA..IA.......SDP.......TAP.......QK
  224-  261 (40.03/14.75)	GLPYPS..VPAMAA.PPqgLW.......LQPPQMSgVLRPPYLQYPAP..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.98|      22|      84|     284|     309|       5
---------------------------------------------------------------------------
  284-  306 (39.91/19.39)	QP........PGvTP...VGAAGG......TSTPSSSHQL
  384-  422 (24.07/ 7.30)	QPipvsmmdlPG.TDwrlVSTSDGkkyyynNRTKTSCWQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.71|      37|      44|     482|     522|       6
---------------------------------------------------------------------------
  482-  522 (56.96/37.38)	QNSPSAL..DLIKKKLQDS.GtpvaSSSIPAPSVQTGPESNG.SK
  525-  565 (45.75/21.97)	DSTAKGLqvDNNKDKAKDTnG....DANVSDTSSDSEDEDNGpSK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30307 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DSGTPVASSSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKAKDTNGDANVSDTSSDSEDEDNGPSKEECII
2) IPNEVAELKKKQDGDVTKDHLMSVSNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSPSALDLIKKKL
3) MASPAWLPQESQPPVSGETPLPMASSAHTTPSTAPAPAPPFAYGMLQNVNASGSSQQSSTHPGMKSNSAVNPMVVQPP
4) PQSGAIFSSNQQHAQSSTNMPDSVAQDVGKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSW
5) PVLPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSVPAMAAPPQGLWLQPPQMS
6) VALPAVPIPDSQPPGVTPVGAAGGTSTPSSSHQLRGTTALQTEVISGPADDKKKLNSVDTVNEDAANNDQLDA
497
422
1
93
164
273
570
495
78
156
248
345










Molecular Recognition Features






MoRF SequenceStartStop




1) LIKKKL
490
495