<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30305

Description Uncharacterized protein
SequenceMASPAWLPQESQPPVSGETPLPMASSAHTTPSTAPAPAPPFAYGMLQNVNASGSSQQSSTHPGMKSNSAVNPMVVQPPGVSLHAAPSFSYNIPQSGAIFSSNQQHAQSSTNMPDSVAQDVGKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWMPTAMSFPVLPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSVPAMAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTSTPSSSHQLRGTTALQTEVISGPADDKKKLNSVDTVNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYDKPAGFKGESHQVSAQPIPVSMMDLPGTDWRLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVSNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSPSALDLIKKKLQDSGTPVASSSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKAKDTNGDANVSDTSSDSEDEDNGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAALKAAIEGFKRLLDEASEDINYNTDYQTFRKKWRNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAASFKSMLKERGDISFNSRWSRVKENLRDDPRYKCVRHEDREVLFNEYISELKAAEHAAERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKDAVTLFQALLVETIKDPLVSWTESKPKLEKDAQRRATNPDLDPLDTEKLFREHVKMLQERCAHEFRVLLAEVLTSDAASQETDDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREALWRRYAEDMLRGQKASHDSREEKHTDAEGRNYLESSKPPFESGRSYERR
Length968
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.788
Instability index54.32
Isoelectric point8.24
Molecular weight106514.99
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30305
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     217.79|      34|      68|     597|     630|       1
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  597-  630 (56.73/34.18)	DPRFKAIPSYSARRSLFEHY..V......K......TRAEEERKEKRA
  666-  701 (44.24/25.01)	DPRFEALDRKEQEHLLNERVlpL......K......KAAEEKAQAMRA
  733-  771 (47.91/27.70)	DPRYKCV.RHEDREVLFNEY..IselkaaE......HAAERETKAKRE
  777-  799 (30.71/15.07)	RER.........ERELRKR..........K......EREEQEMERVRL
  906-  942 (38.19/20.57)	DPRYNKVPRKE.REALWRRY..A......EdmlrgqKASHDSREEK..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     126.13|      23|      25|     171|     193|       2
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  117-  137 (26.68/ 9.34)	AQ.DVG.K...LSSASS.IPHSVPAHT
  144-  167 (28.98/10.86)	PPSDPNyR...PATSWMPTAMSFPVLP
  171-  193 (43.81/20.68)	TQGNPG.P...PGLASSAIISSNPAAP
  197-  221 (26.66/ 9.33)	TDSSPA.AllrPNMPTSA.IASDPTAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.31|      13|     133|     572|     589|       3
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  572-  584 (25.37/10.51)	FKEMLKERGVAPF
  707-  719 (24.94/10.11)	FKSMLKERGDISF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      59.17|      26|     133|     313|     338|       4
---------------------------------------------------------------------------
  313-  328 (19.68/ 6.80)	..................QTEVISGP.ADD..KKKLN
  465-  496 (18.65/ 6.08)	AINT.GGRDAAalkpsslQ....NSPsALDliKKKLQ
  497-  522 (20.84/ 7.62)	DSGTpVASSSI......pAPSVQTGP.ESN..GSK..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     198.97|      56|     222|       1|      63|       5
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    1-   55 (75.36/43.60)	...........MASPA...WL........pQESQPP.VSGetplpmASSAHTTPSTA.PAPAP.PFAYGMLQNVNASGSS
   56-  102 (61.34/23.59)	QQSSTHPG.............mksnsavnpMVVQPP..........GVSLHAAPS..........FSYNIPQSGAIFSSN
  222-  274 (62.28/24.06)	QKGLPYPSvpaMAAPPqglWL............QPPqMSG.........VLRPPYLQyPAPFPgPFPF..PARGVA....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.53|      26|      49|     346|     371|       6
---------------------------------------------------------------------------
  346-  371 (49.49/37.74)	WTAHKTEAGIIYYYNAVTGESTYDKP
  398-  423 (52.04/40.10)	WRLVSTSDGKKYYYNNRTKTSCWQIP
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30305 with Med35 domain of Kingdom Viridiplantae
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