<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30304

Description Uncharacterized protein
SequenceMASPAWLPQESQPPVSGETPLPMASSAHTTPSTAHAKLFNATAFVAPAPAPPFAYGMLQNVNASGSSQQSSTHPGMKSNSAVNPMVVQPPGVSLHAAPSFSYNIPQSGAIFSSNQQHAQSSTNMPDSVAQDVGKLSSASSIPHSVPAHTSTSIMPPPSDPNYRPATSWMPTAMSFPVLPVMPTQGNPGPPGLASSAIISSNPAAPSTGTDSSPAALLRPNMPTSAIASDPTAPQKGLPYPSVPAMAAPPQGLWLQPPQMSGVLRPPYLQYPAPFPGPFPFPARGVALPAVPIPDSQPPGVTPVGAAGGTSTPSSSHQLRGTTALQTEVISGPADDKKKLNSVDTVNEDAANNDQLDAWTAHKTEAGIIYYYNAVTGESTYDKPAGFKGESHQVSAQPIPVSMMDLPGTDWRLVSTSDGKKYYYNNRTKTSCWQIPNEVAELKKKQDGDVTKDHLMSVSNTNVLSDRGSGMVTLNAPAINTGGRDAAALKPSSLQNSPSALDLIKKKLQDSGTPVASSSIPAPSVQTGPESNGSKTVDSTAKGLQVDNNKDKAKDTNGDANVSDTSSDSEDEDNGPSKEECIIQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIPSYSARRSLFEHYVKTRAEEERKEKRAALKAAIEGFKRLLDEASEDINYNTDYQTFRKKWRNDPRFEALDRKEQEHLLNERVLPLKKAAEEKAQAMRAAAAASFKSMLKERGDISFNSRWSRVKENLRDDPRYKCVRHEDREVLFNEYISELKAAEHAAERETKAKREEQDKLRERERELRKRKEREEQEMERVRLKIRRKDAVTLFQALLVETIKDPLVSWTESKPKLEKDAQRRATNPDLDPLDTEKLFREHVKMLQERCAHEFRVLLAEVLTSDAASQETDDGKTVLNSWSTAKRLLKSDPRYNKVPRKEREALWRRYAEDMLRGQKASHDSREEKHTDAEGRNYLESSKPPFESGRSYERR
Length980
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-0.769
Instability index53.60
Isoelectric point8.40
Molecular weight107786.46
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
RNA polymerase binding	GO:0070063	IBA:GO_Central
transcription coregulator activity	GO:0003712	IBA:GO_Central

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30304
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     451.17|      64|      66|     646|     709|       1
---------------------------------------------------------------------------
  581-  638 (76.33/42.80)	..IIQFKEMLKE..RG..VAP.......FSKWEKELPKI.......VFDPRFKAIPSYSARRS...LFEHYV..KTRAEEERK
  646-  709 (104.21/61.15)	AAIEGFKRLLDEASED..INY.......NTDYQTFRKKW.......RNDPRFEALDRKEQEHL...LNERVLPLKKAAEEKAQ
  714-  775 (93.69/54.23)	AAAASFKSMLKERG.D..ISF.......NSRWSRVKENL.......RDDPRYKCVRHEDREVL...FNEYISEL.KAAEHAAE
  780-  812 (46.09/22.90)	A.....KR..EE..QD.....................KL.......RERER.ELRKRKEREEQ...EMERV.........RLK
  817-  882 (65.26/35.52)	DAVTLFQALLVETIKDplVSWteskpklEKDAQ..RRA.........TNPDLDPLD...TEKL...FREHVKMLQERCAHEFR
  887-  952 (65.59/35.74)	EVLTS.....DAASQE..TD..........DGKTVLNSWstakrllKSDPRYNKVPRKEREALwrrYAEDMLRGQKASHDSRE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     243.07|      40|      40|      26|      65|       2
---------------------------------------------------------------------------
   26-   65 (70.11/31.08)	SAHTTP.ST....AH..AKLFN...A............TAFVAPAP......APPF...........AYGM................LQ......NVNASG
   71-  108 (45.23/17.43)	STH..P.GM....KS..NSAVN...P..............MVVQPPgvslhaAPSF...........SY..........................NIPQSG
  120-  191 (32.11/10.23)	SSTNMPdSV....AQdvGKLSS...AssiphsvpahtsTSIMPPPS......DPNYrpatswmptamSFPV................LPvmptqgNPGPPG
  200-  261 (38.63/13.81)	SNPAAP.STgtdsSP..AALLRpnmP............TSAIASDP......TAP............QKGLpypsvpamaappqglwLQ......PPQMSG
  272-  308 (56.99/23.88)	APFPGP.FP....FP..ARGVA...L............PAVPIPDS......QPP..............GV................TP......VGAAGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.53|      26|      50|     358|     383|       3
---------------------------------------------------------------------------
  358-  383 (49.49/34.02)	WTAHKTEAGIIYYYNAVTGESTYDKP
  410-  435 (52.04/36.15)	WRLVSTSDGKKYYYNNRTKTSCWQIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      87.71|      26|     167|     319|     344|       4
---------------------------------------------------------------------------
  319-  344 (43.23/24.78)	RGTTALQ.TEVISGP.ADD..KKKLN..SVDT
  459-  480 (18.24/ 6.42)	......N.TNVLSDR.GSG..MVTLNapAINT
  483-  512 (26.25/12.31)	RDAAALKpSSLQNSPsALDliKKKLQ..DSGT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30304 with Med35 domain of Kingdom Viridiplantae
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