<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30302

Description Uncharacterized protein
SequenceMANNPQYPGLQPLRPPIAGSLDPPRNFVPPMPVQFRPVVPTQQSQQFISMPSQHYQHQPVGPGGVPLIGVGMPPQNQRSQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNMHIPSESMMHQPDSQVHSQAPNGYTPGLGGPAMPLSASYTFAPSAYGQVQTNFSSTGQFQPVPQIHALTGSSSQSITTGATLQSNGGQPSVTTVMPSATIAQPQLAKNGPTDWIEHTSATGRTFYYNKKTKVSSWEKPFELMTPIERVDATTNWKEYTSPDGRKYYYNKITNESKWSVPEELKLARELVEKAIVSGARPEALLNSHPQPSPTPSAIEATPNADNSSLPSQGEPSSPVSVSPVVTTSISNLQSEMPSGSSPSPADAITGTKVDELEAPLNTVTPSDTSVGSDKAIVTDINTAVTPMNDVDNDSAQATLGSADGVSAEDKEDGKNDSIGEKSNDEAAETKAVEPEPPVYANKMEAKDAFKALLESVNVGSDWTWDRSMRLIINDKRYGALKTLGERKQAFNEYLNQRKKQEAEEKRMKQKKAREDFKKMLEESTDLTSSARWSKAVSIFENDERFKAVERDRDRRDMFESFLEELLNKERAKVQEERKRNIMEYKKFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFQDYLHDLEKEEEEQKKIQKEELRKTERKNREEFRKLMEEHIASGILTAKTHWRDYYTKVKDLHAYVAVASNTSGSTPKDLFEDVAEELEKQYHEEKSRIKDTVKLAKITLSSTWAFEDFKSALSKAISTPPISDFNLKLVFDELLERAKEKEEKEAKKRKRLSDDFFHLLHSTKDITVSLKWEDCRPHVEDSQEFRSIGDESLCKEVFEEYIAQLKEEAKESERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKLQSPEHEMDKGKTKKSHGHGSDRKKSRRHSSGHESDEGRHKRHKRDHCREGDLEDGEFGDDHVDRW
Length1017
PositionUnknown
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.06
Grand average of hydropathy-1.071
Instability index58.19
Isoelectric point6.30
Molecular weight115455.34
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30302
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     508.36|      66|      66|     538|     603|       1
---------------------------------------------------------------------------
  473-  535 (71.23/45.61)	.........EAK.DAFKALL.E...SVNVGSDWTW.........DRSMRLII...NDKRYGALKTLGE...RKQAFNEYLNQRKKQE...AEEKR
  538-  603 (102.30/69.35)	Q.......KKAR.EDFKKMLEE...STDLTSSARW.........SKAVSIFE...NDERFKAVERDRD...RRDMFESFLEELLNKE...RAKVQ
  606-  672 (81.48/53.44)	R.......KRNI.MEYKKFLES...CDFIKASTQW.........RKVQDRLE...ADERCSRLEK.ID...RLEIFQDYLHD.LEKEeeeQKKIQ
  673-  747 (65.64/41.34)	KeelrkteRKNR.EEFRKLMEEhiaSGILTAKTHW.........RDYYTKVK...DLHAYVAVASNTSgstPKDLFEDVAEEL...E...K.QYH
  748-  805 (45.05/25.60)	E.......EKSRiKDTVK.L......AKITLSSTWafedfksalSKAISTPP..iSDFNLKLV............FD....ELL..E...RAKEK
  813-  874 (79.33/51.80)	R.......KRLS.DDFFHLLHS...TKDITVSLKW.........EDCRPHVE...DSQEFRSIGDESL...CKEVFEEYIAQL..KE...EAK..
  901-  965 (63.33/39.57)	Q.......RKEK.EGGRERGKD...EAHKKDKAD..........SDSMELTEiqtSKENKRSEDDNRK...QRKKLQS.PEHEMDKG...KTK..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     262.97|      44|      48|       6|      53|       2
---------------------------------------------------------------------------
    6-   53 (81.94/71.14)	QYPGLQPLrppiAGSLDPPRNFVPPMPVQ....F.RPVVPTQQSQQFIS.MP.SQ
   60-   94 (59.23/39.98)	VGPGGVPL....IGVGMPPQNQRS....Q....FsQPI......QQLPP.RP.SP
   95-  126 (52.89/34.65)	Q...L...........PPPSQAI.PMPVA......RPNMHIP.SESMMH.QPdSQ
  135-  164 (32.51/17.53)	YTPGLGG................PAMPLSasytF.APSAYGQVQTNF........
  339-  368 (36.41/19.46)	..................PSQGEPSSPVS....V.SPVVTTSIS.NLQSeMP.SG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.41|      15|      74|     311|     325|       3
---------------------------------------------------------------------------
  177-  191 (20.81/ 7.30)	HALTGSSSQSITTGA
  311-  325 (28.59/12.43)	EALLNSHPQPSPTPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.20|      19|      19|     389|     407|       4
---------------------------------------------------------------------------
  389-  407 (31.37/18.95)	LNT.VTPSDTSVGSDKAIVT
  409-  427 (25.52/14.02)	INTaVTPMN.DVDNDSAQAT
  431-  447 (19.31/ 8.79)	ADG.VSAEDKEDGKNDSI..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     135.09|      34|      39|     219|     252|       5
---------------------------------------------------------------------------
  219-  252 (67.69/42.04)	NGPTDWIEHTSATGRTFYYNKKTKVSSWEKPFEL
  260-  293 (67.40/41.83)	DATTNWKEYTSPDGRKYYYNKITNESKWSVPEEL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30302 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EAKESERKRKEERAKKEKDREERERRKGKQRKEKEGGRERGKDEAHKKDKADSDSMELTEIQTSKENKRSEDDNRKQRKKLQSPEHEMDKGKTKKSHGHGSDRKKSRRHSSGHESDEGRHKRHKRDHCREGDLEDGEFGDDHVDRW
2) MANNPQYPGLQPLRPPIAGSLDPPRNFVPPMPVQFRPVVPTQQSQQFISMPSQHYQHQPVGPGGVPLIGVGMPPQNQRSQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNMHIPSESMMHQPDSQVHSQAPNGYTPGLGGPAMPLS
3) QTNFSSTGQFQPVPQIHALTGSSSQSITTGATLQSNGGQPSVTTVMPSATIAQPQLAKNGPTDW
4) SGARPEALLNSHPQPSPTPSAIEATPNADNSSLPSQGEPSSPVSVSPVVTTSISNLQSEMPSGSSPSPADAITGTKVDELEAPLNTVTPSDTSVGSDKAIVTDINTAVTPMNDVDNDSAQATLGSADGVSAEDKEDGKNDSIGEKSNDEAAETKAVEPEPPVYANKME
872
1
161
306
1017
147
224
473










Molecular Recognition Features






MoRF SequenceStartStop




1) KKLQS
950
954