<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30301

Description Uncharacterized protein
SequenceMGSIVEDADTDTVVYVAVGKNAYKTQQLLHWTVKNFSGKEICLLHIHQPHSLNSFSDRNLSGYEPKDHATKAFQEHGNQTVHKLLDQYVLTLVPAGVRAYKLLIEMDDIEKGITKAIAQHNIRWLVMGAAADRYNLGEYSKHTSDIETGPALLVLNPNTDAKQFENIKSESIPVGALKYFDSYDMKEIKSVSSHLSLNSKWPFNNVMMDRSKLADLMFHEDKTFESQCAKEIRRRKEVEEQLAREKQEVQKMKNQRDEILEELQMVQDQNSALMNQISESQCTETELEEKIISAVDLLISFREQRDRLRIEHANAVREVKVLRKIGEADTSFSYRVEFPAFSFVEINEATNDFDPSWKIGEGRYGSVYKGQLRNMHVAIKMLPSYGCQSLLEFQHQVEVLSRVRHPNLLTLMGSCAESRSLVYEYINNGSLESHLAHKEKNPLPWQIRISIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLSDLGIPSLVQRSLDSADTSTICNNPNERLAYVDPEYFVTGKLTPESDVYSFGVILLQLLTGRPLLGLVRDMKCALEKENLKAVLDSSAGEWPFFQTEQLAYLALRCCEKTWLNRPDLVSEIWSVLEPFKATCIDTPPHLISKKLRRIPSHFVCPIVQEVMEDPYIAADGFTYEEEAIRGWLNSGHDTSPMTNLKLDHTDLVPNYALHNAILEWQQQ
Length705
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.08
Grand average of hydropathy-0.347
Instability index37.71
Isoelectric point5.64
Molecular weight80258.51
Publications
PubMed=20075913

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30301
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     161.06|      47|     319|     142|     188|       1
---------------------------------------------------------------------------
  142-  188 (80.24/48.90)	HTSD..IETG...PALLV...LNPNTDAKQFENIKSESIPVGALKYFDSYDMKEI
  463-  510 (57.68/33.29)	HSSEpcIIHGnlkPSKVL...LDANFVAK....LSDLGIPSLVQRSLDSADTSTI
  515-  543 (23.14/ 9.39)	NERL..AYVD...PEYFVtgkLTPESDVYSFGVI.....................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     135.86|      42|      46|     212|     257|       3
---------------------------------------------------------------------------
  189-  223 (42.91/26.49)	............KSVSSHLSlNSKWPFNNVMMDRSK.LADLMFHEDKT
  224-  270 (58.40/51.16)	FESQCAKEirrrKEVEEQLA.REKQEVQKMKNQRDEiLEELQMVQDQN
  278-  306 (34.55/20.92)	SESQCTET.....ELEEKII.SAVDLLISFREQRD.............
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30301 with Med32 domain of Kingdom Viridiplantae
Unable to open file!