<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30295

Description Uncharacterized protein
SequenceMDSNNWRPNQGTNPTMDTSDWRAQLPTDSRQRIVNKIMDTLKKHLPASGPDGLHELRKIAQRFEDKIYTAATSQPDYLRKISLKMLTMETKSQNTLANNMPPNQVGPSNKPPDQGLVLQSQVHNLGQQHSIPLSSQLQPHQQLLSQNVQNNVASQPNLPPVSSLAQTTSQNIVQNSNMQNITGPNSVGSTISQNSNLQNMFPGSQRQMPGRQQIVPPQNSPQYLYQQQRLKQKQLQSQMQQQQQNLLQPNQLQSSQQSIMQTSSVMQPSMMQTSSLSSIPQNQQSTNVQQSMQSMPQQHSQVIRHQQQQTSIVHQQQIPVTQQPSLPAQQQQQLMGHQPNTTNMQHAQMLGQQNNVGDIQQPQRMLSQQSNLTNLQQRQQLINQQNNPANIHQQLGNNGPGLQQQHLLGHESGNADMQTSHHSAHMLQQPKVPMQQQSQQSTSNLLLPHSQQSQPLGSQQQLMPQIHTQSAQLQQQLGLPQQLNPSQRDMQQRIQASGSLLQQQNVLDQQKQLYQTQRTLPETSATSLDSTTQTAQLSGADWQEEVYQKLQTMKESYLPEMNEMYQKIANKLHQHDSLPQQPKLDQIDKLRAYKSMLERMMALLQIPKNNILPNFKEKLGSYEKQIINLLINSNRPRKGMNSVQAGHHPPTHMSSMQQPQSQVTQVHSHENQMNSQLQSTNLQGSVPTMQQNNIASMQHNSLSGVSTGQQNMMNSMQPGTNLDSVHGNSVNSLQQIPMNSLQQNPVSTAQQTNINSLPSQGGANVIQPNALQSGSSALQHQLKHQQEQQMLQSQQLKQQYQRQQLMQRQLLQQQQQLHHPGKPQLSSQLQTHQMPQLHQMNDINDIKMRQGMGVKSGVFQQHLTSGQHSTYSHQQLKQGSAFPVSSPQLLQAASPQIQQHSSPQVDQQNHLPSKTKVTTPLQSSNSPFVGPTPSPPLAPSPMPGESEKSIPCVSSISNAANIGLQQTGGAVAPAQSLAIGTPGISASPLLAEFSCPDGAHGNALAATSGKSTVTEQPLERLINAVKSISRKALSAAVMDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVSMTNCRLQARNFIAQDGSNGIKRMKRYTSAIPLNVVSSPGSMNDSIKQLTASETSDLESTATSSVKKPKIEVNHALLEEIREINHRLIDTVVDISNEDVDPTAAVAAAEGAEGIIVKCSFIAVALSPSLKSQYASSQMSPIQPLHLLVPANYPNCSPILLDKFPVESSKENEDLSVKARSKFSTSLRSLSQPMSLGEIARTWDVCARSVISEHAQQSGGGSFSSKYGTWENCLTTN
Length1304
PositionTail
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.03
Grand average of hydropathy-0.747
Instability index62.85
Isoelectric point9.23
Molecular weight143638.33
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30295
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            12|     888.20|      76|      76|     330|     405|       1
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   81-  161 (72.28/16.74)	I..........SLKML..................TMET..K.....SQNTLA..NN.............M.......PPNQVGPSN....K.PpDQ....G.................L...VL.......QSQVHNL....GQ........QHSIpLSS.QLQP....HQQLlsqnvQNNvasQPNLPPV
  162-  238 (75.43/17.84)	S..........SLAQT..................TSQNivQ.....NSNMQ....N.............I..TG....PNSVGS................T.................I...SQ.......NSNLQNMfpgsQR....qmpgRQQI.VPP.QNSPQYL.YQQQ.....RLK...QKQLQSQ
  242-  324 (73.24/17.08)	Q..........QQNLL....................QP..N.......QLQS..SQqsimqtssvmqpsM..M....QTSSLSSI.......P.Q...........................NQ.......QS..TNV....QQsmqsmpqqHSQV.IRH.QQQQTSIvHQQQ...........IPVTQQP
  330-  405 (145.79/42.33)	Q..........QQQLM..................GHQP..N.....TTNMQH..AQ.............M..LG...QQNNVGDIQ....Q.P.QR....M.................L...SQ.......QSNLTNL....QQ........RQQL.INQ.QNNPANI.HQQL.....GNN...GPGLQQQ
  411-  482 (82.01/20.13)	E..........S......................GNAD..M.....QTSHHS..AH.............M..L....QQPKVPMQQ....Q.S.QQstsnL.................LlphSQ.......QSQ..PL....GS........QQQL.MPQiHTQSAQL.QQQL.............GLPQQ
  483-  549 (55.87/11.03)	L..........N.........................P..S.....QRDMQQ.rIQ.............A..SGsllQQQNVLDQQkqlyQ.T.QR....T.................L...PE.......TSA.TSL....DS........TTQ...TA.QLSGADW.QEEV...............YQK
  550-  621 (53.27/10.13)	L..........QTMKE..................SYLP..E.....MNEMYQkiAN.............K..LH...QHDSLP..Q....Q.P.K.......................L...DQidklrayKSMLERM....MA........LLQ..IPK.NNILPNF.KEKL.....GS...........
  622-  692 (65.82/14.49)	Y..........EKQIInllinsnrprkgmnsvqaGHHP........PTHM....SS.............M...............Q....Q.P......................................QSQVTQV....HS........HENQ.MNS.QLQSTN.....L.....QGS...VPTMQQN
  698-  760 (63.31/13.62)	QhnslsgvstgQQNMM.................nSMQP..G......TNLDS..VH.................G.....NSVNSLQ....QiP.........................................MNSL....QQ...................NPVST.AQQT.....NIN...S..LPSQ
  761-  814 (65.53/14.39)	G..........GANVI....................QP..NalqsgSSALQH...Q.............L..KH...QQE..............QQ....M.................L....Q.......SQQLKQQ....YQ........RQQL.MQR.Q.......................L.LQQQ
  815-  899 (79.21/19.16)	Q..........Q..L....................HHP..G.kpqlSSQLQT..HQ.............MpqLH...QMNDINDIK....M.R.QG....M.................G...VK...sgvfQQHLTSG....QH....stysHQQL.KQG.SAFPVSS.PQLL.....QAA...SPQI.QQ
  907-  984 (56.43/11.23)	Q..........QNHLP..................SKTK..V.....TTPLQS..SN......................SPFVGPTP....S.P.PL....ApspmpgeseksipcvssI...SN.......AANI.GL....QQ........TGGA.V.....APA....QSL.....AIG...TPGI...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     283.97|     105|     115|     988|    1102|       3
---------------------------------------------------------------------------
  988- 1077 (99.02/88.04)	..............................P.LLAEFSCPD..GAHGNAL..A..ATSGKSTVTEQPLE...RLINAVKSISRKaLSAAVMDIGsvvsmNDRIagsAPGNGSRAAVGEDLVsMTNCRLQA
 1078- 1190 (143.87/93.57)	RNFIAQDGSNGIKRMKRYTSAIPLN.vvssP.GSMNDSIKQltASETSDLesT..ATSS...VKKPKIEvnhALLEEIREINHR.LIDTVVDIS.....NEDV...DPTAAVAAAEGAEGI.IVKCSFIA
 1195- 1252 (41.09/17.87)	PSLKSQYASSQMSPIQPLHLLVPANypncsPiLLDKFPVES..SKENEDL..SvkARSKFST....................................................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30295 with Med15 domain of Kingdom Viridiplantae
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