<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP30290

Description Uncharacterized protein
SequenceMDHYGSSGGSWTMIPTHNSSIQSQSQSNQDPNLFLQQQQQQFLQSQPFQQALPPQSPFQQHHHLYQQQQQQQQQQRLLPQPQQQQQQQQQQQQPQNLHQSLASHYHLLHLVENLAEVIEHGTPDQQSDALINELSNHFEKCQQLLNSISDSISTKAMTVEGQKKKLEESEQLLNQRRDLIANYRKSVEDLVRSEP
Length195
PositionMiddle
OrganismGlycine max (Soybean) (Glycine hispida)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Fabales> Fabaceae> Papilionoideae> 50 kb inversion clade> NPAAA clade> indigoferoid/millettioid clade> Phaseoleae> Glycine> Glycine subgen. Soja.
Aromaticity0.05
Grand average of hydropathy-1.167
Instability index94.13
Isoelectric point5.82
Molecular weight22684.59
Publications
PubMed=20075913

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP30290
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.91|      18|      46|      36|      56|       2
---------------------------------------------------------------------------
   36-   56 (26.64/13.33)	QQQQQQFLQSQPfqQALpPQS
   83-  100 (36.27/10.21)	QQQQQQQQQQQP..QNL.HQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     102.61|      24|      27|     137|     160|       3
---------------------------------------------------------------------------
  120-  133 (24.08/13.39)	HGTPDQQ.....SD.....ALINE
  137-  160 (41.81/28.73)	HFEKCQQLLNSISDSISTKAMTVE
  165-  188 (36.72/24.33)	KLEESEQLLNQRRDLIANYRKSVE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP30290 with Med9 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDHYGSSGGSWTMIPTHNSSIQSQSQSNQDPNLFLQQQQQ
2) QSQPFQQALPPQSPFQQHHHLYQQQQQQQQQQRLLPQPQQQQQQQQQQQQPQNLHQSLA
1
44
40
102










Molecular Recognition Features






MoRF SequenceStartStop




1) RLLPQP
2) SWTMI
76
10
81
14